Update Snakefile

22251172 · Rachel LEGENDRE · 98a3d9eb · 22251172
Commit 22251172 authored 3 years ago by Rachel LEGENDRE
--- a/Snakefile
+++ b/Snakefile
@@ -314,7 +314,7 @@ final_output = []
 #----------------------------------

 fastqc_input_fastq = input_data
-fastqc_output_done = "00-Fastqc/{{SAMPLE}}{}_fastqc{}".format(rt1,config["input_extension"])
+fastqc_output_done = "00-Fastqc/{{SAMPLE}}{}_fastqc.done".format(rt1)
 fastqc_wkdir = "00-Fastqc"
 fastqc_log = "00-Fastqc/logs/{{SAMPLE}}{}_fastqc_raw.log".format(rt1)
 final_output.extend(expand(fastqc_output_done, SAMPLE=samples))