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Commit d05b2a10 authored by Hélène LOPEZ-MAESTRE's avatar Hélène LOPEZ-MAESTRE
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Update Tuesday/Deeptools.md

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...@@ -31,7 +31,9 @@ bamCoverage --bam sample.bam -o sample_SeqDepthNorm.bw \ ...@@ -31,7 +31,9 @@ bamCoverage --bam sample.bam -o sample_SeqDepthNorm.bw \
We can then combine all the samples by running : We can then combine all the samples by running :
```
multiBigwigSummary bins --binSize 50 -b file1.bw file2.bw -o multibwsumresults.npz multiBigwigSummary bins --binSize 50 -b file1.bw file2.bw -o multibwsumresults.npz
```
### Plot graphic ### Plot graphic
``` ```
...@@ -54,7 +56,8 @@ plotCorrelation \ ...@@ -54,7 +56,8 @@ plotCorrelation \
--plotTitle "Your title here" \ --plotTitle "Your title here" \
--whatToPlot heatmap \ --whatToPlot heatmap \
-o Plot_SpearmanCorr_bigwigScores.png \ -o Plot_SpearmanCorr_bigwigScores.png \
--outFileCorMatrix SpearmanCorr_bigwigScores.tab --outFileCorMatrix SpearmanCorr_bigwigScores.tab \
--colorMap Blues
``` ```
<img src="deeptools_images/Plot_SpearmanCorr_bigwigScores.png" width="700" align="center" > <img src="deeptools_images/Plot_SpearmanCorr_bigwigScores.png" width="700" align="center" >
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