Skip to content
Snippets Groups Projects
Commit 703b8559 authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
Browse files

Update runme.sh

parent e833c259
Branches
Tags
No related merge requests found
Hide whitespace changes
Inline Side-by-side
Showing
with 4 additions and 2 deletions
runme.sh
+ 4
− 2
View file @ 703b8559
......@@ -30,7 +30,9 @@ module load MultiQC/1.9
sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock
# or without module:
# or without module:
conda activate snakemake
#check the pipeline:
snakemake --use-envmodules -n
#run the pipeline
sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment