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Commit 70d73e7b authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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Update runme.sh

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...@@ -27,10 +27,10 @@ module load subread/2.0.0 ...@@ -27,10 +27,10 @@ module load subread/2.0.0
module load deepTools/3.4.1 module load deepTools/3.4.1
module load MultiQC/1.9 module load MultiQC/1.9
sbatch -q hubbioit -p hubbioit snakemake -q hubbioit -p hubbioit --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock
# or without module: # or without module:
conda activate snakemake conda activate snakemake
sbatch -q hubbioit -p hubbioit snakemake -q hubbioit -p hubbioit --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock
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