Dockerfile.python

FROM harbor.pasteur.fr/images/python:${PYTHON_VERSION}

# define geographic location during installation
ENV TZ=Etc/UTC
ENV DEBIAN_FRONTEND=noninteractive

EXPOSE 3838
CMD ["shiny-server"]

# install dependencies
RUN apt-get update \
 && apt-get install -y \
     software-properties-common \
     wget \
     nano \
     wget \
     curl \
     lsb-release \
     libcurl4-openssl-dev \
     gcc \
     gfortran \
     g++ \
     libreadline-dev \
     zlib1g-dev \
     libbz2-dev \
     liblzma-dev \
     libpcre2-dev \
     libcairo-dev \
     libpng-dev \
     libicu-dev \
     libxml2-dev \
     libssl-dev \
     make \
     libtiff-dev \
     xorg-dev \
     libx11-dev \
 && rm -rf /var/lib/apt/lists/*

# Upgrade pip and install wheel, shiny :
RUN pip install --no-cache-dir --upgrade pip \
 && python -m pip install wheel shiny

# Install shiny server
ARG SHINY_SERVER_VERSION=latest
RUN mkdir /opt/scripts
COPY ./scripts/install_shiny_server.sh /opt/scripts/install_shiny_server.sh
RUN /opt/scripts/install_shiny_server.sh

# allows trafic from all ips
RUN sed -i "s/3838/3838 0.0.0.0/g" /etc/shiny-server/shiny-server.conf

# grant shiny to created bookmark state directory in this directory
RUN chown shiny:shiny /var/lib/shiny-server
# grant shiny to write logs
RUN mkdir -p /var/log/shiny-server \
 && chown shiny:shiny /var/log/shiny-server

# Create an example app 
RUN shiny create /srv/shiny-server/.