binder files

.gitignore

+.D*
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binder/environment.yml

+name: improc_beginner
+channels:
+  - conda-forge
+dependencies:
+  - pip
+  - numpy
+  - matplotlib
+  - scikit-image
+  - jupyter
+  - jupyterlab
+  - ipywidgets
+  - pandas
+  - nodejs
+  - jupyter_contrib_nbextensions
+  - ipyvolume
+  - pip:
+    - requests
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binder/postBuild

+python installation/download_data.py
+
+mkdir PyImageCourse_beginner
+mv *.ipynb PyImageCourse_beginner/
+
+jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
+jupyter labextension install ipyvolume --no-build
+jupyter labextension install jupyter-threejs --no-build
+jupyter labextension install itk-jupyter-widgets --no-build
+
+jupyter lab build
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installation/download_data.py

+import sys, os, zipfile, tarfile
+import urllib.request
+import requests
+
+where_to_save = 'Data/'
+
+#create data directory
+if not os.path.exists(where_to_save):
+    os.makedirs(where_to_save)
+
+url = 'http://wiki.cmci.info/sampleimages/cells_Actin.tif'  
+urllib.request.urlretrieve(url, where_to_save+'cells_Actin.tif')
+
+url = 'https://cildata.crbs.ucsd.edu/media/images/13901/13901.tif' 
+urllib.request.urlretrieve(url, where_to_save+'yeast.tif')
+
+url = 'https://cildata.crbs.ucsd.edu/media/images/48102/48102.tif' 
+urllib.request.urlretrieve(url, where_to_save+'3colors.tif')
+
+url = 'https://cildata.crbs.ucsd.edu/media/images/13585/13585.tif' 
+urllib.request.urlretrieve(url, where_to_save+'myoblast.tif')
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