Comments update

src/main/java/fr/pasteur/ida/zellige/gui/SelectionController.java

@@ -246,6 +246,8 @@ public class SelectionController implements Initializable
 
     /**
      * Displays the slice of the classified stack according to the value of the Z Slider.
+     *
+     * @param value the z value
      */
     public void refreshDisplay( int value )
     {

src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/OtsuClassification.java

@@ -106,10 +106,10 @@ public class OtsuClassification< T extends RealType< T > & NativeType< T > >
     }
 
     /**
-     * @param input
-     * @param factory
-     * @param <T>
-     * @return
+     * @param input   the input image as a {@link RandomAccessibleInterval}
+     * @param factory the {@link ImgFactory} of the input image
+     * @param <T>     the type on the input
+     * @return an {@link Img}
      */
     public static < T extends RealType< T > & NativeType< T > > Img< T > computeOtsuImage( final RandomAccessibleInterval< T > input, ImgFactory< T > factory )
     {
@@ -120,11 +120,11 @@ public class OtsuClassification< T extends RealType< T > & NativeType< T > >
 
 
     /**
-     * @param input
-     * @param grid
-     * @param userThreshold
-     * @param <T>
-     * @return
+     * @param input         the input image as a {@link RandomAccessibleInterval}
+     * @param grid          the local thresholds image as a {@link RandomAccessibleInterval}
+     * @param userThreshold the user threshold
+     * @param <T>           the type on the input
+     * @return the classified image as an {@link Img}
      */
     public static < T extends RealType< T > & NativeType< T > > Img< BitType >
     applyLocalThreshold( IterableInterval< T > input, IterableInterval< T > grid, int userThreshold )

src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HeightMapArrayWriter.java

@@ -28,7 +28,6 @@
  */
 package fr.pasteur.ida.zellige.utils.jzy3D;
 
-import fr.pasteur.ida.zellige.element.Surface;
 import fr.pasteur.ida.zellige.utils.test.CSVWriter;
 import io.scif.img.IO;
 import io.scif.img.SCIFIOImgPlus;
@@ -58,11 +57,6 @@ public class HeightMapArrayWriter< T extends RealType< T > & NativeType< T > > e
         init();
     }
 
-    /**
-     * Displays the local maximums found using jzy3D package.
-     *
-     * @param surface the {@link Surface} to display
-     */
     public static < T extends RealType< T > & NativeType< T > > void writeHeightMap( Img< T > surface, String originalInput, int surfaceNumber )
     {
         try

src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SelectedPixelsArrayWriter.java

@@ -29,7 +29,6 @@
 package fr.pasteur.ida.zellige.utils.jzy3D;
 
 import fr.pasteur.ida.zellige.element.Pixels;
-import fr.pasteur.ida.zellige.element.Surface;
 import fr.pasteur.ida.zellige.utils.test.CSVWriter;
 import org.jzy3d.analysis.AbstractAnalysis;
 
@@ -49,11 +48,7 @@ public class SelectedPixelsArrayWriter extends AbstractAnalysis
         init();
     }
 
-    /**
-     * Displays the local maximums found using jzy3D package.
-     *
-     * @param selectedPixels the {@link Surface} to display
-     */
+
     public static void writeSelectedPixels( Pixels[][] selectedPixels, String originalInput )
     {
         try