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iPPIDB
ippidb-web
Commits
004f4690
Commit
004f4690
authored
8 years ago
by
Hervé MENAGER
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add mysql convertor to avoid "bytearray" strings from mysql driver
Former-commit-id: 64c85ed8155a7034a145bc99b364c1f68a623def
parent
8efe9f64
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ippisite/db.sqlite3.REMOVED.git-id
+1
-1
1 addition, 1 deletion
ippisite/db.sqlite3.REMOVED.git-id
ippisite/ippidb/management/commands/import_v1_data.py
+13
-1
13 additions, 1 deletion
ippisite/ippidb/management/commands/import_v1_data.py
with
14 additions
and
2 deletions
ippisite/db.sqlite3.REMOVED.git-id
+
1
−
1
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004f4690
22fcf51cee85dcecd7c0de2fecdd0852abb2ce71
\ No newline at end of file
2b15950995d163e68e50e2aabf1b4e9a4ff2dfeb
\ No newline at end of file
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ippisite/ippidb/management/commands/import_v1_data.py
+
13
−
1
View file @
004f4690
...
...
@@ -9,6 +9,18 @@ from ippidb.models import Bibliography, Protein, Taxonomy, MolecularFunction, \
Domain
,
ProteinDomainBoundComplex
,
ProteinDomainPartnerComplex
,
Symmetry
,
Ppi
,
PpiComplex
,
Disease
,
\
Compound
,
MDDRCompoundImport
,
MDDRActivityClass
class
MyConverter
(
mysql
.
connector
.
conversion
.
MySQLConverter
):
def
row_to_python
(
self
,
row
,
fields
):
row
=
super
(
MyConverter
,
self
).
row_to_python
(
row
,
fields
)
def
to_unicode
(
col
):
if
type
(
col
)
==
bytearray
:
return
col
.
decode
(
'
utf-8
'
)
return
col
return
[
to_unicode
(
col
)
for
col
in
row
]
class
Command
(
BaseCommand
):
help
=
"
Import data from the local v1 database
"
...
...
@@ -73,7 +85,7 @@ class Command(BaseCommand):
def
handle
(
self
,
*
args
,
**
options
):
conn
=
mysql
.
connector
.
connect
(
host
=
"
localhost
"
,
user
=
"
root
"
,
password
=
"
ippidb
"
,
database
=
"
ippidb
"
)
conn
=
mysql
.
connector
.
connect
(
converter_class
=
MyConverter
,
host
=
"
localhost
"
,
user
=
"
root
"
,
password
=
"
ippidb
"
,
database
=
"
ippidb
"
)
cursor
=
conn
.
cursor
()
if
options
[
'
bibliographies
'
]:
cursor
.
execute
(
"""
SELECT * FROM biblio
"""
)
...
...
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