Commit 715b9e7d authored by Hervé  MENAGER's avatar Hervé MENAGER
Browse files

add models.CASCADE as on_delete in ForeignKey fields of models


Former-commit-id: 3c15969fda531d1b7128c5a34395f34a008e3bad
parent cc8df260
......@@ -104,7 +104,7 @@ class Protein(AutoFillableModel):
short_name = models.CharField('Short name', max_length=50)
gene_name = models.CharField('Gene name', unique=True, max_length=30)
entry_name = models.CharField('Entry name', max_length=30)
organism = models.ForeignKey('Taxonomy', default='Homo sapiens')
organism = models.ForeignKey('Taxonomy', models.CASCADE)
molecular_functions = models.ManyToManyField(MolecularFunction)
def autofill(self):
......@@ -152,8 +152,8 @@ class Domain(AutoFillableModel):
class ProteinDomainComplex(models.Model):
protein = models.ForeignKey('Protein')
domain = models.ForeignKey('Domain')
protein = models.ForeignKey('Protein', models.CASCADE)
domain = models.ForeignKey('Domain', models.CASCADE)
ppc_copy_nb = models.IntegerField(
'Number of copies of the protein in the complex')
......@@ -201,7 +201,7 @@ class Ppi(models.Model):
pdb_id = models.CharField('PDB ID', max_length=4, null=True)
pockets_nb = models.IntegerField(
'Total number of pockets in the complex', default=1)
symmetry = models.ForeignKey(Symmetry)
symmetry = models.ForeignKey(Symmetry, models.CASCADE)
diseases = models.ManyToManyField(Disease)
def __str__(self):
......@@ -233,8 +233,8 @@ class Ppi(models.Model):
return name
class PpiComplex(models.Model):
ppi = models.ForeignKey(Ppi)
complex = models.ForeignKey(ProteinDomainComplex)
ppi = models.ForeignKey(Ppi, models.CASCADE)
complex = models.ForeignKey(ProteinDomainComplex, models.CASCADE)
cc_nb = models.IntegerField(
'Number of copies of the complex in the PPI', default=1)
......@@ -318,7 +318,7 @@ class Compound(models.Model):
iupac_name = models.CharField(
'IUPAC name', max_length=255, blank=True, null=True)
mddr_compound = models.ForeignKey(
'MDDRCompoundImport', blank=True, null=True)
'MDDRCompoundImport', models.CASCADE, blank=True, null=True)
@property
def biblio_refs(self):
......@@ -407,15 +407,15 @@ class TestActivityDescription(models.Model):
('I', 'Inhibition'),
('S', 'Stabilization')
)
biblio = models.ForeignKey(Bibliography)
ppi = models.ForeignKey(Ppi, blank=True, null=True)
biblio = models.ForeignKey(Bibliography, models.CASCADE)
ppi = models.ForeignKey(Ppi, models.CASCADE, blank=True, null=True)
test_name = models.CharField('Test name', max_length=100)
test_type = models.CharField('Test type', max_length=5, choices=TEST_TYPES)
test_modulation_type = models.CharField(
'Test modulation type', max_length=1, choices=TEST_MODULATION_TYPES)
nb_active_compounds = models.IntegerField(
'Total number of active compounds')
cell_line = models.ForeignKey(CellLine, blank=True, null=True)
cell_line = models.ForeignKey(CellLine, models.CASCADE, blank=True, null=True)
def get_complexes(self):
"""
......@@ -440,8 +440,8 @@ class CompoundActivityResult(models.Model):
('pKd', 'pKd (dissociation constant, -log10)'),
('pKi', 'pKi (inhibition constant, -log10)'),
)
compound = models.ForeignKey(Compound)
test_activity_description = models.ForeignKey(TestActivityDescription)
compound = models.ForeignKey(Compound, models.CASCADE)
test_activity_description = models.ForeignKey(TestActivityDescription, models.CASCADE)
activity_type = models.CharField(
'Activity type', max_length=5, choices=ACTIVITY_TYPES)
activity = models.DecimalField(
......@@ -455,16 +455,16 @@ class CompoundActivityResult(models.Model):
class TestCytotoxDescription(models.Model):
biblio = models.ForeignKey(Bibliography)
biblio = models.ForeignKey(Bibliography, models.CASCADE)
test_name = models.CharField('Cytotoxicity test name', max_length=100)
cell_line = models.ForeignKey(CellLine)
cell_line = models.ForeignKey(CellLine, models.CASCADE)
compound_concentration = models.DecimalField(
'Compound concentration in μM', max_digits=7, decimal_places=3, blank=True, null=True)
class CompoundCytotoxicityResult(models.Model):
compound = models.ForeignKey(Compound)
test_cytotoxicity_description = models.ForeignKey(TestCytotoxDescription)
compound = models.ForeignKey(Compound, models.CASCADE)
test_cytotoxicity_description = models.ForeignKey(TestCytotoxDescription, models.CASCADE)
toxicity = models.BooleanField('Toxicity', default=False)
class Meta:
......@@ -478,9 +478,9 @@ class TestPKDescription(models.Model):
('IP', ''),
('SL', 'SL')
)
biblio = models.ForeignKey(Bibliography)
biblio = models.ForeignKey(Bibliography, models.CASCADE)
test_name = models.CharField('Pharmacokinetic test name', max_length=100)
organism = models.ForeignKey(Taxonomy)
organism = models.ForeignKey(Taxonomy, models.CASCADE)
administration_mode = models.CharField(
'Administration mode', max_length=2, choices=ADMINISTRATION_MODES, blank=True, null=True)
dose = models.DecimalField(
......@@ -490,8 +490,8 @@ class TestPKDescription(models.Model):
class CompoundPKResult(models.Model):
compound = models.ForeignKey(Compound)
test_pk_description = models.ForeignKey(TestPKDescription)
compound = models.ForeignKey(Compound, models.CASCADE)
test_pk_description = models.ForeignKey(TestPKDescription, models.CASCADE)
tolerated = models.NullBooleanField('Tolerated', null=True)
auc = models.IntegerField(
'Area under curve (ng.mL-1.hr)', blank=True, null=True)
......@@ -516,10 +516,10 @@ class CompoundAction(models.Model):
('A', 'Allosteric'),
('U', 'Unspecified')
)
compound = models.ForeignKey(Compound)
compound = models.ForeignKey(Compound, models.CASCADE)
activation_mode = models.CharField(
'Activation mode', max_length=1, choices=ACTIVATION_MODES)
ppi = models.ForeignKey(Ppi)
ppi = models.ForeignKey(Ppi, models.CASCADE)
pdb_id = models.CharField('PDB ID', max_length=4, blank=True, null=True)
nb_copy_compounds = models.IntegerField(
'Number of copies for the compound')
......@@ -536,8 +536,8 @@ class CompoundAction(models.Model):
class RefCompoundBiblio(models.Model):
compound = models.ForeignKey(Compound)
bibliography = models.ForeignKey(Bibliography)
compound = models.ForeignKey(Compound, models.CASCADE)
bibliography = models.ForeignKey(Bibliography, models.CASCADE)
compound_name = models.CharField(
'Compound name in the publication', max_length=50)
......
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