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iPPIDB
ippidb-web
Commits
715b9e7d
Commit
715b9e7d
authored
Dec 04, 2017
by
Hervé MENAGER
Browse files
add models.CASCADE as on_delete in ForeignKey fields of models
Former-commit-id: 3c15969fda531d1b7128c5a34395f34a008e3bad
parent
cc8df260
Changes
1
Hide whitespace changes
Inline
Side-by-side
ippisite/ippidb/models.py
View file @
715b9e7d
...
...
@@ -104,7 +104,7 @@ class Protein(AutoFillableModel):
short_name
=
models
.
CharField
(
'Short name'
,
max_length
=
50
)
gene_name
=
models
.
CharField
(
'Gene name'
,
unique
=
True
,
max_length
=
30
)
entry_name
=
models
.
CharField
(
'Entry name'
,
max_length
=
30
)
organism
=
models
.
ForeignKey
(
'Taxonomy'
,
default
=
'Homo sapiens'
)
organism
=
models
.
ForeignKey
(
'Taxonomy'
,
models
.
CASCADE
)
molecular_functions
=
models
.
ManyToManyField
(
MolecularFunction
)
def
autofill
(
self
):
...
...
@@ -152,8 +152,8 @@ class Domain(AutoFillableModel):
class
ProteinDomainComplex
(
models
.
Model
):
protein
=
models
.
ForeignKey
(
'Protein'
)
domain
=
models
.
ForeignKey
(
'Domain'
)
protein
=
models
.
ForeignKey
(
'Protein'
,
models
.
CASCADE
)
domain
=
models
.
ForeignKey
(
'Domain'
,
models
.
CASCADE
)
ppc_copy_nb
=
models
.
IntegerField
(
'Number of copies of the protein in the complex'
)
...
...
@@ -201,7 +201,7 @@ class Ppi(models.Model):
pdb_id
=
models
.
CharField
(
'PDB ID'
,
max_length
=
4
,
null
=
True
)
pockets_nb
=
models
.
IntegerField
(
'Total number of pockets in the complex'
,
default
=
1
)
symmetry
=
models
.
ForeignKey
(
Symmetry
)
symmetry
=
models
.
ForeignKey
(
Symmetry
,
models
.
CASCADE
)
diseases
=
models
.
ManyToManyField
(
Disease
)
def
__str__
(
self
):
...
...
@@ -233,8 +233,8 @@ class Ppi(models.Model):
return
name
class
PpiComplex
(
models
.
Model
):
ppi
=
models
.
ForeignKey
(
Ppi
)
complex
=
models
.
ForeignKey
(
ProteinDomainComplex
)
ppi
=
models
.
ForeignKey
(
Ppi
,
models
.
CASCADE
)
complex
=
models
.
ForeignKey
(
ProteinDomainComplex
,
models
.
CASCADE
)
cc_nb
=
models
.
IntegerField
(
'Number of copies of the complex in the PPI'
,
default
=
1
)
...
...
@@ -318,7 +318,7 @@ class Compound(models.Model):
iupac_name
=
models
.
CharField
(
'IUPAC name'
,
max_length
=
255
,
blank
=
True
,
null
=
True
)
mddr_compound
=
models
.
ForeignKey
(
'MDDRCompoundImport'
,
blank
=
True
,
null
=
True
)
'MDDRCompoundImport'
,
models
.
CASCADE
,
blank
=
True
,
null
=
True
)
@
property
def
biblio_refs
(
self
):
...
...
@@ -407,15 +407,15 @@ class TestActivityDescription(models.Model):
(
'I'
,
'Inhibition'
),
(
'S'
,
'Stabilization'
)
)
biblio
=
models
.
ForeignKey
(
Bibliography
)
ppi
=
models
.
ForeignKey
(
Ppi
,
blank
=
True
,
null
=
True
)
biblio
=
models
.
ForeignKey
(
Bibliography
,
models
.
CASCADE
)
ppi
=
models
.
ForeignKey
(
Ppi
,
models
.
CASCADE
,
blank
=
True
,
null
=
True
)
test_name
=
models
.
CharField
(
'Test name'
,
max_length
=
100
)
test_type
=
models
.
CharField
(
'Test type'
,
max_length
=
5
,
choices
=
TEST_TYPES
)
test_modulation_type
=
models
.
CharField
(
'Test modulation type'
,
max_length
=
1
,
choices
=
TEST_MODULATION_TYPES
)
nb_active_compounds
=
models
.
IntegerField
(
'Total number of active compounds'
)
cell_line
=
models
.
ForeignKey
(
CellLine
,
blank
=
True
,
null
=
True
)
cell_line
=
models
.
ForeignKey
(
CellLine
,
models
.
CASCADE
,
blank
=
True
,
null
=
True
)
def
get_complexes
(
self
):
"""
...
...
@@ -440,8 +440,8 @@ class CompoundActivityResult(models.Model):
(
'pKd'
,
'pKd (dissociation constant, -log10)'
),
(
'pKi'
,
'pKi (inhibition constant, -log10)'
),
)
compound
=
models
.
ForeignKey
(
Compound
)
test_activity_description
=
models
.
ForeignKey
(
TestActivityDescription
)
compound
=
models
.
ForeignKey
(
Compound
,
models
.
CASCADE
)
test_activity_description
=
models
.
ForeignKey
(
TestActivityDescription
,
models
.
CASCADE
)
activity_type
=
models
.
CharField
(
'Activity type'
,
max_length
=
5
,
choices
=
ACTIVITY_TYPES
)
activity
=
models
.
DecimalField
(
...
...
@@ -455,16 +455,16 @@ class CompoundActivityResult(models.Model):
class
TestCytotoxDescription
(
models
.
Model
):
biblio
=
models
.
ForeignKey
(
Bibliography
)
biblio
=
models
.
ForeignKey
(
Bibliography
,
models
.
CASCADE
)
test_name
=
models
.
CharField
(
'Cytotoxicity test name'
,
max_length
=
100
)
cell_line
=
models
.
ForeignKey
(
CellLine
)
cell_line
=
models
.
ForeignKey
(
CellLine
,
models
.
CASCADE
)
compound_concentration
=
models
.
DecimalField
(
'Compound concentration in μM'
,
max_digits
=
7
,
decimal_places
=
3
,
blank
=
True
,
null
=
True
)
class
CompoundCytotoxicityResult
(
models
.
Model
):
compound
=
models
.
ForeignKey
(
Compound
)
test_cytotoxicity_description
=
models
.
ForeignKey
(
TestCytotoxDescription
)
compound
=
models
.
ForeignKey
(
Compound
,
models
.
CASCADE
)
test_cytotoxicity_description
=
models
.
ForeignKey
(
TestCytotoxDescription
,
models
.
CASCADE
)
toxicity
=
models
.
BooleanField
(
'Toxicity'
,
default
=
False
)
class
Meta
:
...
...
@@ -478,9 +478,9 @@ class TestPKDescription(models.Model):
(
'IP'
,
''
),
(
'SL'
,
'SL'
)
)
biblio
=
models
.
ForeignKey
(
Bibliography
)
biblio
=
models
.
ForeignKey
(
Bibliography
,
models
.
CASCADE
)
test_name
=
models
.
CharField
(
'Pharmacokinetic test name'
,
max_length
=
100
)
organism
=
models
.
ForeignKey
(
Taxonomy
)
organism
=
models
.
ForeignKey
(
Taxonomy
,
models
.
CASCADE
)
administration_mode
=
models
.
CharField
(
'Administration mode'
,
max_length
=
2
,
choices
=
ADMINISTRATION_MODES
,
blank
=
True
,
null
=
True
)
dose
=
models
.
DecimalField
(
...
...
@@ -490,8 +490,8 @@ class TestPKDescription(models.Model):
class
CompoundPKResult
(
models
.
Model
):
compound
=
models
.
ForeignKey
(
Compound
)
test_pk_description
=
models
.
ForeignKey
(
TestPKDescription
)
compound
=
models
.
ForeignKey
(
Compound
,
models
.
CASCADE
)
test_pk_description
=
models
.
ForeignKey
(
TestPKDescription
,
models
.
CASCADE
)
tolerated
=
models
.
NullBooleanField
(
'Tolerated'
,
null
=
True
)
auc
=
models
.
IntegerField
(
'Area under curve (ng.mL-1.hr)'
,
blank
=
True
,
null
=
True
)
...
...
@@ -516,10 +516,10 @@ class CompoundAction(models.Model):
(
'A'
,
'Allosteric'
),
(
'U'
,
'Unspecified'
)
)
compound
=
models
.
ForeignKey
(
Compound
)
compound
=
models
.
ForeignKey
(
Compound
,
models
.
CASCADE
)
activation_mode
=
models
.
CharField
(
'Activation mode'
,
max_length
=
1
,
choices
=
ACTIVATION_MODES
)
ppi
=
models
.
ForeignKey
(
Ppi
)
ppi
=
models
.
ForeignKey
(
Ppi
,
models
.
CASCADE
)
pdb_id
=
models
.
CharField
(
'PDB ID'
,
max_length
=
4
,
blank
=
True
,
null
=
True
)
nb_copy_compounds
=
models
.
IntegerField
(
'Number of copies for the compound'
)
...
...
@@ -536,8 +536,8 @@ class CompoundAction(models.Model):
class
RefCompoundBiblio
(
models
.
Model
):
compound
=
models
.
ForeignKey
(
Compound
)
bibliography
=
models
.
ForeignKey
(
Bibliography
)
compound
=
models
.
ForeignKey
(
Compound
,
models
.
CASCADE
)
bibliography
=
models
.
ForeignKey
(
Bibliography
,
models
.
CASCADE
)
compound_name
=
models
.
CharField
(
'Compound name in the publication'
,
max_length
=
50
)
...
...
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