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Commit 88ce1e7d authored by Hervé MENAGER's avatar Hervé MENAGER
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create first "bibliography access" to the DB 

Former-commit-id: 4fe2403ad50929281eddcd6202b7c96cb72a3a5e
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ippisite/ippidb/templates/ppi_card.html 0 → 100644
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View file @ 88ce1e7d
{% extends "base.html" %}
{% block title %}inhibitors of Protein-Protein Interaction Database{% endblock %}
{% block content %}
<div id="mainnav">
</div>
<div class="inner-wrap">
<nav class="breadcrumb" role="navigation">
<div id="breadcrumb-label" class="breadcrumb-label">You are here</div>
<div aria-labelledby="breadcrumb-label">
Fonction Fil d'Arianne
</div>
</nav>
<div id="main-wrapper" class="page">
<div id="main">
<div id="content" class="main-content">
<main role="main">
<div class="row">
<div class="col-3">
<div class="nav flex-column nav-pills" id="v-pills-tab" role="tablist">
<a class="nav-link active" id="v-pills-bib-tab" data-toggle="pill" href="#v-pills-bib" role="tab" aria-controls="v-pills-bib" aria-expanded="true">Bibliography</a>
<a class="nav-link" id="v-pills-comp-tab" data-toggle="pill" href="#v-pills-comp" role="tab" aria-controls="v-pills-comp" aria-expanded="true">Compounds</a>
<a class="nav-link" id="v-pills-target-tab" data-toggle="pill" href="#v-pills-target" role="tab" aria-controls="v-pills-target" aria-expanded="true">Targets</a>
<a class="nav-link" id="v-pills-test-tab" data-toggle="pill" href="#v-pills-test" role="tab" aria-controls="v-pills-test" aria-expanded="true">Tests</a>
</div>
</div>
<div class="col-9">
<div class="tab-content" id="v-pills-tabContent">
<div class="tab-pane fade show active" id="v-pills-bib" role="tabpanel" aria-labelledby="v-pills-bib-tab">
<div class="card">
<div class="card-body">
<p><a target="_blank" class="card-link" href="https://www.ncbi.nlm.nih.gov/pubmed/{{ bibliography.id_source }}">{{ bibliography.authors_list }}. {{ authors.biblio_year }}. {{ bibliography.title }} {{ bibliography.journal_name }}. </a></p>
</div>
</div>
<div class="card">
<div class="card-body">
<ul class="list-group">
<li class="list-group-item">Cytotoxicity data: {% if bibliography.cytotox %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item"><i>in silico</i> study: {% if bibliography.in_silico %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item"><i>in vitro</i> study: {% if bibliography.in_vitro %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item"><i>in vivo</i> study: {% if bibliography.in_vivo %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item"><i>in cellulo</i> study: {% if bibliography.in_cellulo %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item">pharmacokinetic study: {% if bibliography.pharmacokinetic %}&check;{% else %}&cross;{% endif %}</li>
<li class="list-group-item">X-ray study: {% if bibliography.x_ray %}&check;{% else %}&cross;{% endif %}</li>
</ul>
</div>
</div>
</div>
<div class="tab-pane fade" id="v-pills-comp" role="tabpanel" aria-labelledby="v-pills-comp-tab">
{% for compound_biblio in compound_biblios %}
<div class="card">
<div class="card-body">
<ul class="list-group">
<li class="list-group-item">Common name: {{ compound_biblio.compound.common_name }}</li>
<li class="list-group-item">MDDR: <i>TODO</i></li>
<li class="list-group-item">Canonical SMILES: {{ compound_biblio.compound.canonical_smile }}</li>
<li class="list-group-item">IUPAC name: {{ compound_biblio.compound.iupac_name }}</li>
<li class="list-group-item">mentionned as {{ compound_biblio.compound_name }}</li>
</ul>
</div>
</div>
{% endfor %}
</div>
<div class="tab-pane fade" id="v-pills-target" role="tabpanel" aria-labelledby="v-pills-target-tab">
Target info
</div>
<div class="tab-pane fade" id="v-pills-test" role="tabpanel" aria-labelledby="v-pills-test-tab">
Tests info
</div>
</div>
</div>
</div>
</main><!-- .site-main -->
</div>
</div><!-- div main -->
</div>
</div>
{% endblock %}
ippisite/ippidb/urls.py
+ 1
− 0
View file @ 88ce1e7d
......@@ -19,6 +19,7 @@ urlpatterns = [
url(r'^query$', views.query, name='query'),
url(r'^query/pharma/$', views.pharma, name='pharma'),
url(r'^query/chemical/$', views.chemical, name='chemical'),
url(r'^biblio_ppi/(?P<biblio_id>\d+)$', views.ppi_card, name='biblio_ppi_card'),
url(r'^tutorials$', views.tutorials, name='tutorials'),
url(r'^admin-session$', views.adminSession, name='admin-session'),
url(r'^admin-session/add/(?P<step>.+)/$',
......
ippisite/ippidb/views.py
+ 11
− 3
View file @ 88ce1e7d
import ippidb
from django.shortcuts import render
from django.http import HttpResponseRedirect
from django.http import HttpResponseRedirect, Http404
from formtools.wizard.views import SessionWizardView, NamedUrlSessionWizardView
from .forms import IdForm, BibliographyForm, PDBForm, ProteinForm, ProteinDomainComplexTypeForm, ProteinDomainComplexForm, PpiForm, ProteinFormSet, PDBFormSet
from .models import Protein, Bibliography, ProteinDomainComplex
from .models import Protein, Bibliography, ProteinDomainComplex, RefCompoundBiblio
from .ws import get_pdb_uniprot_mapping
......@@ -20,7 +20,6 @@ def about(request):
def general(request):
return render(request, 'general.html')
def pharmacology(request):
return render(request, 'pharmacology.html')
......@@ -130,3 +129,12 @@ class IppiWizard(NamedUrlSessionWizardView):
return render(self.request, '/admin-session/add.html', {
'form_data': [form.cleaned_data for form in form_list],
})
def ppi_card(request, biblio_id):
try:
bibliography = Bibliography.objects.get(pk=biblio_id)
except Bibliography.DoesNotExist:
raise Http404("No bibliography data for %s" % biblio_id)
refs = RefCompoundBiblio.objects.filter(bibliography_id = bibliography.id)
return render(request, 'ppi_card.html', {'bibliography': bibliography,
'compound_biblios': refs})
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