started working on compound LE vs LLE biplot, WIP

Former-commit-id: 76a8d4129343edf8f59505cd3317ad37a2cde881

ippisite/ippidb/management/commands/lle_le.py

+import glob
+
+from django.utils import timezone
+from django.core.management import BaseCommand, CommandError
+
+from ippidb.models import Compound
+
+class Command(BaseCommand):
+
+    help = "Generate the data for the compound LE vs LLE biplot"
+
+    def handle(self, *args, **options):
+        self.stdout.write(self.style.SUCCESS('Generating the LE vs. LLE biplot...'))
+        df = Compound.objects.all().to_dataframe()
+        df['le']=df[
+        print(df.to_csv())
+        print(df.columns)

ippisite/ippidb/models.py

 from __future__ import unicode_literals
 
 from django.db import models
+from django_pandas.managers import DataFrameManager
 
 from .ws import get_pubmed_info, get_epo_info, get_uniprot_info, get_taxonomy_info, get_go_info, get_pfam_info
 
@@ -321,6 +322,8 @@ class Compound(models.Model):
     mddr_compound = models.ForeignKey(
         'MDDRCompoundImport', models.CASCADE, blank=True, null=True)
 
+    objects = DataFrameManager()
+
     @property
     def biblio_refs(self):
         """

ippisite/requirements.txt

 Django==1.11
 django-bootstrap3
+django-pandas
 bioservices
 #typing
 django-extensions>=2.0.5