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iPPIDB
ippidb-web
Commits
f8e055c0
Commit
f8e055c0
authored
6 years ago
by
Hervé MENAGER
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change compound features selection for the PCA
Former-commit-id: 1238d7d963ed74e098df7ab4e0330d7a11b020ea
parent
01bd762c
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ippisite/ippidb/management/commands/pca.py
+6
-0
6 additions, 0 deletions
ippisite/ippidb/management/commands/pca.py
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ippisite/ippidb/management/commands/pca.py
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View file @
f8e055c0
...
@@ -29,6 +29,12 @@ class Command(BaseCommand):
...
@@ -29,6 +29,12 @@ class Command(BaseCommand):
'
randic_index
'
,
'
rdf070m
'
,
'
rotatable_bond_fraction
'
,
'
randic_index
'
,
'
rdf070m
'
,
'
rotatable_bond_fraction
'
,
'
sum_atom_polar
'
,
'
sum_atom_vol_vdw
'
,
'
tpsa
'
,
'
ui
'
,
'
sum_atom_polar
'
,
'
sum_atom_vol_vdw
'
,
'
tpsa
'
,
'
ui
'
,
'
wiener_index
'
]
'
wiener_index
'
]
features
=
[
'
molecular_weight
'
,
'
a_log_p
'
,
'
nb_donor_h
'
,
'
nb_acceptor_h
'
,
'
tpsa
'
,
'
nb_rotatable_bonds
'
,
'
nb_benzene_like_rings
'
,
'
fsp3
'
,
'
nb_chiral_centers
'
,
'
nb_csp3
'
,
'
nb_atom
'
,
'
nb_bonds
'
,
'
nb_atom_non_h
'
,
'
nb_rings
'
,
'
nb_multiple_bonds
'
,
'
nb_aromatic_bonds
'
,
'
aromatic_ratio
'
]
#MISSING: ArRing - Number of Aromatic ring
PcaBiplotData
.
objects
.
all
().
delete
()
PcaBiplotData
.
objects
.
all
().
delete
()
self
.
stdout
.
write
(
self
.
stdout
.
write
(
self
.
style
.
SUCCESS
(
'
Successfully flushed PCA biplot data
'
))
self
.
style
.
SUCCESS
(
'
Successfully flushed PCA biplot data
'
))
...
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