Commits · 6f5a4bb9516a25b374f1ec919f063221066cdd1c · iPPIDB / ippidb-web

Jul 31, 2018

restructure the compounds list view · 6f5a4bb9

Hervé MENAGER authored 6 years ago

* this view is now class based and a lot more structured
* filters are handled supposedly in a clever manner


Former-commit-id: 510e9b5282b06d28fb839ba20ff44d76ab41f584

6f5a4bb9

Jul 29, 2018
- denormalize ppi name to improve compound query performance · 85b91008
  Hervé MENAGER authored 6 years ago
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Former-commit-id: efe273eac847d110d0b8791fa2eb89191d212ffa
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  85b91008
Jul 28, 2018
- avoid crash when the compounds list resultset is empty · 77ebf4d0
  Hervé MENAGER authored 6 years ago
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Former-commit-id: bc41c38f663e431a2bfb2b8bb7036b0ed249d410
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  77ebf4d0
Jul 27, 2018
- Ppi fields pdb_id and family can be blank · e8419a04
  Hervé MENAGER authored 6 years ago
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Former-commit-id: a334477697b35ef6e5ca68ecff70604d49a59c9f
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  e8419a04
- CompoundActivityResult inhibition_percentage can be blank · ab60d00a
  Hervé MENAGER authored 6 years ago
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sqlite db modified


Former-commit-id: 5c12ac45f86f8e3865adbd9892e7c757372417ea
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  ab60d00a
- CompoundActivityResult inhibition_percentage can be blank · 164f039b
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 33780e413e6e3cd5b2b8fb919eabb8fb5c85db70
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  164f039b
- journal name can be blank in Bibliography patent entries · ff7ac9b5
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 266ba132a332918bcc37d816da1c5776acff2833
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  ff7ac9b5
- corrections to model for MDDRCompoundImport · 0600bfcd
  Hervé MENAGER authored 6 years ago
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- name is now a text field
- add "Phase 0" and "Suspended" for development phases


Former-commit-id: f8b3e83ba413335a74f85c216078246180176eb6
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  0600bfcd
- convert canonical_smiles from CharField(500) to TextField · caba9899
  Hervé MENAGER authored 6 years ago
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to think these could only be 500 chars long was a pipe dream...


Former-commit-id: a7b7445303b98f64de0edff49e623b9ba01fff9a
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  caba9899
- MDDRActivityClass name is now a TextField · ddc3e5b3
  Hervé MENAGER authored 6 years ago
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Former-commit-id: a8482013b45e68c02ad369f976f83e33ef1b5577
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  ddc3e5b3
Jul 26, 2018

parse correctly activity classes from MDDR SDF files · fc39b00d

Hervé MENAGER authored 6 years ago

the list of activity classes is sep. by line breaks, NOT commas


Former-commit-id: 1cd78ad8f3c3215e1179bed6b6d3c31f34f92ed4

fc39b00d

Jul 25, 2018
- define biplot json as TextField to avoid max_length pg problems · b2dfb590
  Hervé MENAGER authored 6 years ago
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Former-commit-id: d0a059132b70a76919992b0c8aafbe2e5cd3ffd5
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  b2dfb590
- migrate version of the database to change cmax into c_max · 99c8d0f5
  Hervé MENAGER authored 6 years ago
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Former-commit-id: be774d59e639c817a67ebfb187fd28f53f91e6a6
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  99c8d0f5
- hack the squashed migration to have it actually work · ed4a6d99
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 66beebe3f8c1fcb5694f2b2c63cc82f3109a7975
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  ed4a6d99
- add squashed migration for pristine DBs ;) · a2da0027
  Hervé MENAGER authored 6 years ago
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Former-commit-id: d062fb81c1f37bcb3e205375dd440b5c3a0fd59e
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  a2da0027
- rename cmax to c_max in ippidb model · 02431938
  Hervé MENAGER authored 6 years ago
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cmax is a reserved iPPI-DB word


Former-commit-id: 5aeb97dd481dc50c2816216dff1b281cde676843
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  02431938
- ansible postgresql wip · 8fcb18d0
  Hervé MENAGER authored 6 years ago
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run create db as postgres

Former-commit-id: bdb4628a6a36d6b95666a7be22b4d85004cbffca
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  8fcb18d0
- Update deploy.yaml · 2b9961c6
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 248b6698ba8f919fbee451a00568060baec485cb
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  2b9961c6
- ansible postgres wip · ccf27e2b
  Hervé MENAGER authored 6 years ago
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correction to pg_hba.conf copy

Former-commit-id: 78bab400b551edec935cf2994004ffc547634c91
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  ccf27e2b
- ansible postgresql wip · 4bf44ad5
  Hervé MENAGER authored 6 years ago
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ls pwd on source...

Former-commit-id: 46b482c75abf0178f96fe0ced7b338a6a07966a8
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  4bf44ad5
- ansible postgresql wip · 7f89d146
  Hervé MENAGER authored 6 years ago
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remove nonsensical debugs

Former-commit-id: 4604b4faacc0fe3710e85cb2e36a27c8464e3825
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  7f89d146
- ansible postgresql wip · 42364c01
  Hervé MENAGER authored 6 years ago
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more debug

Former-commit-id: 3f83b4afb27ac4601e15d936c82476a30ec6042f
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  42364c01
- ansible postgresql wip · 6e0e5edf
  Hervé MENAGER authored 6 years ago
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more pg_hba.conf debug

Former-commit-id: 0df2e4b833b0a50afd6719129dbb74d88145b30e
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  6e0e5edf
- ansible postgresql wip · faeb7e9e
  Hervé MENAGER authored 6 years ago
```
even more debug attempts

Former-commit-id: a088f78b22a6b0a8e990a8e6c7fa417258bfe118
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  faeb7e9e
- ansible postgresql wip · e29d1ad0
  Hervé MENAGER authored 6 years ago
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more debug attempts...

Former-commit-id: 4ddbb3aa6941c4cee99d06a1f914cd6fe5a501d3
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  e29d1ad0
- ansible postgresql wip · d7210d4d
  Hervé MENAGER authored 6 years ago
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add debug in deploy.yaml for failing pg_hba.conf file

Former-commit-id: b8e72cba9421047cfa3320815372e7218b1214d4
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  d7210d4d
Jul 24, 2018
- ansible postgresql wip · b81c66ac
  Hervé MENAGER authored 6 years ago
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correct syntax in Update postgresql_db

Former-commit-id: 786bf9bba6c5468952b0e9086fbbf335dcc713a7
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  b81c66ac
- ansible postgresql wip · 713a1c65
  Hervé MENAGER authored 6 years ago
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create pg_hba.conf file

Former-commit-id: a14002aa0a29a2959ea23d8decd326228ab8936a
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  713a1c65
- ansible postgresql wip · d41049a3
  Hervé MENAGER authored 6 years ago
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- copy pg_hba.conf from repository
- create database in postgresql

Former-commit-id: b97e17036e31be27b80b0446a91a3c09e5ce2873
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  d41049a3
- add psycopg2 to django requirements.txt · 89d35579
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 318895cc68e1304281bea635e8fd0a137f0ba667
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  89d35579
- set db backend to postgreSQL in production · 9c5f6af5
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 349fa6ec3df49fd6c55034dd3a4ce2822e7ceabf
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  9c5f6af5
- ansible postgreSQL create db user WIP · 218f4031
  Hervé MENAGER authored 6 years ago
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Former-commit-id: ee4c4db3f6f78dc2ebcab748aaa30e34c5e730d3
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  218f4031
- Merge branch 'master' of https://gitlab.pasteur.fr/hub/iPPIDB · 1daac56d
  Rachel TORCHET authored 6 years ago
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Former-commit-id: 50b6800393e27fd72e26297619cd960fc03cf79d
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  1daac56d
- Update of CompoundForm ad ProteinDomainComplexForm · a670b417
  Rachel TORCHET authored 6 years ago
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Former-commit-id: b5c77033eeee60f02d839d0f2b3c7f8227cf4078
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  a670b417
- ansible postgreSQL WIP · 91aaee98
  Hervé MENAGER authored 6 years ago
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Former-commit-id: fec285387bd0384b58c9b21c0342fa7bebbc2012
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  91aaee98
- correct syntax in postgresql_user call in ansible · d902cb31
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 4b2232191d48d49573171ae589d19ec9032fe5d5
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  d902cb31
- postgresql ansible wip · a5d05580
  Hervé MENAGER authored 6 years ago
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(with help from @bbrancot)

Former-commit-id: 17ca1fd4ddd424433338097b58951fd52887d0b7
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  a5d05580
Jul 23, 2018
- install python-psycopg2 for postgresql setup · 5eca3b34
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 0f6caa940cb84ba9df006d975149384096a62138
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  5eca3b34
- more postgreSQL ansible WIP · 10066189
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 70427797cdda9c19a8386a9425f40aa162dd1a2e
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  10066189
- correct formatting for ansible postgresql config · 3fc75696
  Hervé MENAGER authored 6 years ago
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Former-commit-id: 9c78c71abecbb794c9dac2abfc0767fb4b94549d
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  3fc75696