Changed version and updated README

README.md

@@ -76,7 +76,7 @@ If you do not have access to a dedicated partition, or if there is not enough fr
 
 ### Using previously generated MMSeqs2 output
 It is possible to provide a MMSeqs2 file, with conditions.
-1. The name of the file must be $prefix.m8, $prefix being the string passed via the `-o` option.
+1. The name of the file must be `$output_prefix.m8`, `$output_prefix` being the string passed via the `-o` option.
 2. The format of the file must be: query,target,qcov,tcov,fident,evalue,bits
 
 ### Mandatory parameter

wGRR

@@ -7,7 +7,7 @@ trap 'rm -rf "$tmp"' EXIT
 export LC_ALL=C
 SECONDS=0
 
-readonly VERSION=1.2a
+readonly VERSION=1.3
 
 bold=$(tput bold)
 green=$(tput setaf 2)