setup.py

# coding: utf-8

import os
import pathlib
import pkg_resources

from setuptools import setup, find_packages

NAME = "jass"
VERSION = "2.2"

SETUP_DIR = os.path.dirname(__file__)
README = os.path.join(SETUP_DIR, 'README.md')
readme = open(README).read()

with pathlib.Path('requirements.txt').open() as requirements_txt:
    REQUIRES = [
        str(requirement)
        for requirement
        in pkg_resources.parse_requirements(requirements_txt)
    ]

setup(
    name=NAME,
    version=VERSION,
    description="JASS allows for single SNP joint analysis of multiple GWAS summary statistics",
    author='Hervé Ménager and Pierre Lechat and Carla Lasry and Vincent Guillemot and Hugues Aschard and Hanna Julienne',
    author_email="hmenager@pasteur.fr, pierre.lechat@pasteur.fr, carla.lasry@pasteur.fr, vincent.guillemot@pasteur.fr, hugues.aschard@pasteur.fr, hanna.julienne@pasteur.fr",
    url="https://gitlab.pasteur.fr/statistical-genetics/jass",
    packages=find_packages(),
    install_requires=REQUIRES,
    license="MIT",
    keywords=["GWAS", "Data analysis", "summary statistics"],
    package_data={'jass': ['swagger/swagger.yaml', "data/*.tsv"]},
    include_package_data=True,
    long_description=readme,
    long_description_content_type="text/markdown",
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
    ],
    python_requires='>=3.6',
    setup_requires=[
        'pytest-runner',
        'Flask-Testing'
    ],
    tests_require=[
        'pytest',
        'Flask-Testing'
    ],
    entry_points={
        'console_scripts': [
            'jass=jass.__main__:main',
        ]
    }
)