FIX #92 FEAT #93 FEAT #94

jass/swagger/swagger.yaml

@@ -141,11 +141,15 @@ paths:
                 end:
                   description: end position of the region
                   type: string
+                to_init:
+                  description: first call to local_projects ? ("1"=yes)
+                  type: string
               required:
                 - phenotypeID
                 - chromosome
                 - start
                 - end
+                - to_init
       responses:
         "200":
           description: Project created
@@ -530,6 +534,86 @@ paths:
                 ID,rs545945172,rs371628865,rs61769339,rs539032812,rs12238997,rs189800799
                 z_IHEC_MONOP,-0.3623372836601329,-0.429856541533544,-0.8457360635272954,-0.9809852811227732,-0.6936527568935886,0.4382385293216385
                 z_RA_RA,,,,,,
+  "/projects/{projectID}/gene_exon":
+    get:
+      description: Retrieve gene and exon data for the selected region
+      operationId: get_project_gene_exon_data
+      parameters:
+        - name: projectID
+          in: path
+          description: project ID
+          required: true
+          schema:
+            type: string
+          example: "bca9d414e0f9a67b9e0d2131a47c316c"
+      responses:
+        "200":
+          description: |
+            genes and exons data in CSV format
+          content:
+            text/csv; charset=utf-8:
+              schema:
+                type: string
+                title: Genes and exons data
+              example: |
+                ,GeneID,exon_label,exon_start,exon_end,gene_label,gene_start,gene_end,gene_direction,gene_biotype
+                1983,55229,NM_018216.4-9,2449603,2449703,PANK4,2439976,2458035,-,protein_coding
+                1984,55229,NM_018216.4-8,2449955,2450036,PANK4,2439976,2458035,-,protein_coding
+                1985,55229,NM_018216.4-7,2450582,2450763,PANK4,2439976,2458035,-,protein_coding
+                1986,55229,NM_018216.4-6,2451240,2451393,PANK4,2439976,2458035,-,protein_coding
+                1987,55229,NM_018216.4-5,2451761,2451853,PANK4,2439976,2458035,-,protein_coding
+                1988,55229,NM_018216.4-4,2452162,2452345,PANK4,2439976,2458035,-,protein_coding
+                1989,55229,NM_018216.4-3,2452540,2452754,PANK4,2439976,2458035,-,protein_coding
+                1990,55229,NM_018216.4-2,2453157,2453239,PANK4,2439976,2458035,-,protein_coding
+                1991,55229,NM_018216.4-1,2457903,2458035,PANK4,2439976,2458035,-,protein_coding
+  "/projects/{projectID}/error_msg":
+    get:
+      description: |
+        Retrieve the functional error messages stored in log files
+      operationId: get_error_msg
+      parameters:
+        - name: projectID
+          in: path
+          description: project ID
+          required: true
+          schema:
+            type: string
+          example: "bca9d414e0f9a67b9e0d2131a47c316c"
+      responses:
+        "200":
+          description: |
+            Generation of the concatenation of all functional error messages
+          content:
+            text/csv; charset=utf-8:
+              schema:
+                type: string
+                title: error message
+              example: |
+                There is no SNP in the selected region
+  "/projects/{projectID}/dispo_gene_exon":
+    get:
+      description: |
+        Test if genes and exons data are available
+      operationId: get_dispo_gene_exon
+      parameters:
+        - name: projectID
+          in: path
+          description: project ID
+          required: true
+          schema:
+            type: string
+          example: "bca9d414e0f9a67b9e0d2131a47c316c"
+      responses:
+        "200":
+          description: |
+            Indicates whether gene and exon data is available
+          content:
+            text/csv; charset=utf-8:
+              schema:
+                type: string
+                title: return code
+              example: |
+                READY
 components:
   schemas:
     Phenotype: