transmit dataTable name to fetch phenotypes

client/pages/phenotypes.vue

@@ -45,7 +45,11 @@ Please select the traits you want to analyze jointly with the Omnibus test. A re
 <script>
 export default {
   async asyncData({ $axios, params, $auth }) {
-    const phenotypes = await $axios.$get('/phenotypes')
+      const data = {
+        initTableName: "initTable.hdf5"
+        // initTableName: "initTableTest.hdf5"
+      };
+    const phenotypes = await $axios.$post('/phenotypes', data)
     return {
       phenotypes,
     }

jass/models/phenotype.py

 # coding: utf-8
-from typing import List
+from typing import List, Optional
 
 import pandas
-from pydantic import BaseModel
+import re
+from pydantic import BaseModel, validator
 
 
 class Phenotype(BaseModel):
@@ -72,5 +73,17 @@ def get_available_phenotypes(init_file_path: str):
     return phenotypes
 
 
+_initTableNamePattern = re.compile("^([A-Z]*[a-z]*-*\.?[0-9]*)+$")
+
+
+class ProjectNameModel(BaseModel):
+    initTableName: Optional[str] = "initTable.hdf5"
+
+    @validator("initTableName")
+    def validate_path_injection(cls, value):
+        if not _initTableNamePattern.match(value):
+            raise ValueError(f"Prohibited char, only \"{_initTableNamePattern.pattern}\" allowed.")
+        return value
+
 class PhenotypeIdList(BaseModel):
     phenotypeID: List[str] = []

jass/server.py

@@ -52,10 +52,10 @@ async def read_index():
     return RedirectResponse(url="/webui/")
 
 
-@app.get("/api/phenotypes", response_model=List[Phenotype])
-def phenotypes_list():
+@app.post("/api/phenotypes", response_model=List[Phenotype])
+def phenotypes_list(project_name: ProjectNameModel):
     """List phenotypes"""
-    return get_available_phenotypes(os.path.join(config["DATA_DIR"], "initTable.hdf5"))
+    return get_available_phenotypes(os.path.join(config["DATA_DIR"], project_name.initTableName))
 
 @app.get("/api/initmeta")
 def inittable_meta():

test_docker_compose.sh

@@ -25,6 +25,30 @@ curl -I http://0.0.0.0:3001/phenotypes/ \
 if [ "$(cat log/02-*.log | grep "200 OK" | wc -l)" == "0" ]; then exit 02; fi
 
 
+echo "Test fetching phenotypes through API"
+curl --location --request POST http://0.0.0.0:8080/api/phenotypes/ \
+--header 'Content-Type: application/json' \
+--data-raw '{"initTableName":"initTableTest1.hdf5"}' \
+  -o log/11-post-phenotypes.json \
+  1> log/11-post-phenotypes.log \
+  2> log/11-post-phenotypes.err
+
+if [ "$(cat log/11-*.json | grep "Internal Server Error" | wc -l)" == "1" ]; then exit 11; fi
+
+
+echo "Test fetching phenotypes through API"
+curl --location --request POST http://0.0.0.0:8080/api/phenotypes/ \
+--header 'Content-Type: application/json' \
+--data-raw '{"initTableName":"initTable.hdf5"}' \
+  -o log/12-post-phenotypes.json \
+  1> log/12-post-phenotypes.log \
+  2> log/12-post-phenotypes.err
+
+if [ "$(cat log/12-*.json | grep "Internal Server Error" | wc -l)" == "1" ]; then exit 12; fi
+
+if [ "$(cat log/11-*.json)" == "$(cat log/12-*.json)" ]; then echo "should not be equal"; exit 12; fi
+
+
 echo "Testing project creation"
 curl --location --request POST 'http://0.0.0.0:8080/api/projects' \
 --header 'Accept: text/html' \