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Commit fe5f676a authored by Hanna JULIENNE's avatar Hanna JULIENNE
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command line tool to compute gain

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data/coef_mean_model.tsv 0 → 100644
+ 7
− 0
View file @ fe5f676a
0
k_coef_mv 0.07740334977380119
log10_avg_distance_cor_coef_mv -0.6999110771883902
log10_mean_gencov_coef_mv 0.746794584985343
avg_Neff_coef_mv 0.07289261717080556
avg_h2_mixer_coef_mv -0.516496395500929
avg_perc_h2_diff_region_coef_mv 0.15727591593399
data/combi_sample.tsv 0 → 100644
+ 201
− 0
View file @ fe5f676a
,trait,k,avg_distance_cor,mean_gencov,avg_Neff,avg_h2_mixer,avg_perc_h2_diff_region
1590,z_VAN-HEEL_CELIAC z_GLG_HDL z_GLG_LDL z_WILLER_ATRIALFIBRI z_PGC_BIP z_SPIRO-UKB_FEV1-FVC z_UKIBD_CD,7,0.0590830304651648,0.015347619047619,127387.05229530609,0.2194681225668153,0.5603096008205554
563,z_GEFOS_BMD-FOREARM z_GLG_HDL z_MAGIC_HOMA-B z_GLG_LDL z_DIAGRAM_T2D z_IMSGC-WTCC2_MULTSCLE z_TAGC_ASTHMA z_NEIGHBORHOOD_POAG z_WILLER_ATRIALFIBRI z_GLG_TC,10,0.0976903717379686,0.0123144082,72409.04275154244,0.0960473769919533,0.4744109853496899
1176,z_MAGIC_HBA1C z_NEIGHBORHOOD_POAG z_DIAGRAM_T2D z_UKBIOBANK_POAG z_GEFOS_BMD-FOREARM z_SPIRO-UKB_FEV1-FVC z_MAGIC_2HGLU-ADJBMI z_WILLER_ATRIALFIBRI z_GLG_HDL,9,0.1259168550911433,0.0127416666666666,101526.3699107523,0.1035261413153112,0.532680760371381
647,z_VGHRV_SDNN z_MAGIC_HBA1C z_MAGIC_2HGLU-ADJBMI z_GLG_LDL z_UKIBD_CD z_C4D_CHD,6,0.1497129719310509,0.01508,42349.44331194103,0.1336805621997407,0.5317645663141873
706,z_GEFOS_BMD-FOREARM z_VAN-HEEL_CELIAC z_MAGIC_HBA1C z_GLG_TG z_MAGIC_HOMA-B z_IMSGC-WTCC2_MULTSCLE,6,0.1279517984531755,0.0141858306,39131.43430378047,0.1027698883137745,0.4699712597742396
487,z_SPIRO-UKB_FEV1 z_GLG_LDL z_VAN-HEEL_CELIAC z_GLG_TG,4,0.0845412610596257,0.018,152338.49375122687,0.1474322876775918,0.5349461523209061
1134,z_MAGIC_HBA1C z_BCAC_BREAST-CANCER-ERPOS z_TAGC_ASTHMA z_SSGAC_COLLEGE z_MAGIC_HOMA-B z_CARDIOGRAMPLUSC4D_CAD,6,0.1420672595836319,0.00838,112852.50999980255,0.0445240218365629,0.5854264271884885
1375,z_VGHRV_SDNN z_MAGIC_HOMA-B z_UKIBD_UC z_GLG_LDL z_MAGIC_HBA1C z_IGAP_AZ z_DIAGRAM_T2D,7,0.1203259304226253,0.0097523809523809,49070.67952593441,0.0942467793088732,0.4743856536919613
1167,z_WILLER_ATRIALFIBRI z_NEIGHBORHOOD_POAG z_ICBP_DBP z_GLG_TG z_IGAP_AZ z_VAN-HEEL_CELIAC z_TAGC_ASTHMA z_SPIRO-UKB_PEF,8,0.0580211015914355,0.0082642857142857,145566.2038757884,0.140015833098121,0.5704705953116378
336,z_ISGEC_SLEEP-SD z_C4D_CHD z_MAGIC_HOMA-B z_TAGC_ASTHMA z_BCAC_BREAST-CANCER-ERPOS z_DIAGRAM_T2D,6,0.1337544044789961,0.00758,82705.81943479212,0.0407266907992723,0.5956343242037365
41,z_GLG_TG z_GLG_LDL z_SPIRO-UKB_FEV1-FVC z_GLG_HDL,4,0.1283763678145305,0.02655,174196.0,0.1236007456024044,0.4317283091016877
298,z_TAGC_ASTHMA z_MAGIC_HBA1C z_ISGEC_SLEEP-SD z_SSGAC_COLLEGE z_BCAC_BREAST-CANCER-ERPOS z_IGAP_AZ z_DIAGRAM_T2D z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_HOMA-B z_NEIGHBORHOOD_POAG z_IMSGC-WTCC2_MULTSCLE,11,0.1472338050632623,0.0086706810727272,80626.02514303278,0.0646078587377984,0.617459161574024
1647,z_IMSGC-WTCC2_MULTSCLE z_SSGAC_COLLEGE,2,0.0134755833219838,0.0013,75649.31540888772,0.1323774813348991,0.7223225759517726
315,z_SPIRO-UKB_FEV1 z_SPIRO-UKB_PEF z_WILLER_ATRIALFIBRI z_IMSGC-WTCC2_MULTSCLE z_GLG_TC z_PGC_BIP,6,0.0532904011707912,0.0144466666666666,194193.69290476877,0.1775083022574499,0.61681560971493
1887,z_MAGIC_HBA1C z_GLG_LDL z_VGHRV_SDNN z_MAGIC_HOMA-B,4,0.1252416298957048,0.0103333333333333,55141.5,0.0571012630925966,0.4261467763873102
1644,z_VAN-HEEL_CELIAC z_MAGIC_2HGLU-ADJBMI z_GLG_TC z_SPIRO-UKB_FVC,4,0.0960418188010153,0.0156833333333333,130885.99375122684,0.1511967311641081,0.6432719530887009
1723,z_GLG_HDL z_WILLER_ATRIALFIBRI z_C4D_CHD z_MAGIC_HOMA-B z_NEIGHBORHOOD_POAG z_GLG_LDL z_TAGC_ASTHMA z_MAGIC_HBA1C z_MAGIC_2HGLU-ADJBMI z_VAN-HEEL_CELIAC z_GLG_TC,11,0.1228551517980456,0.0144281521636363,68721.8996648356,0.0909802678793049,0.5132459717744748
1785,z_VGHRV_SDNN z_GIANT_HIP z_GLG_TG z_GLG_LDL z_VAN-HEEL_CELIAC z_SSGAC_COLLEGE z_IMSGC-WTCC2_MULTSCLE z_PGC_BIP z_ICBP_DBP z_GLG_TC,10,0.0855612012893199,0.0182488888888888,94514.0566135874,0.1749872756491363,0.6058872516205108
1042,z_ISGEC_SLEEP-SD z_ICBP_DBP z_ICBP_SBP z_BCAC_BREAST-CANCER-ERPOS z_CARDIOGRAMPLUSC4D_CAD z_SPIRO-UKB_FEV1-FVC z_UKBIOBANK_ALAT z_PGC_BIP z_GIANT_HIP z_SSGAC_COLLEGE z_ISGEC_SLEEP-MEAN,11,0.0906698729760977,0.0171521947818181,207684.2586868554,0.1684968807560016,0.7340270038141383
1230,z_WILLER_ATRIALFIBRI z_VGHRV_SDNN z_GLG_TC z_UKBIOBANK_POAG,4,0.0217326319938325,0.0044166666666666,103337.56838834115,0.1183176857517645,0.537311156472734
559,z_ISGEC_SLEEP-MEAN z_SPIRO-UKB_FEV1-FVC z_ICBP_SBP z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_PEF z_SPIRO-UKB_FEV1 z_ISGEC_DIURNAL-IN z_SSGAC_COLLEGE z_ICBP_DBP,9,0.0784367531306572,0.0245916666666666,258089.6972913661,0.1722573777134419,0.7216792330462357
465,z_UKIBD_UC z_PGC_BIP z_ICBP_DBP z_GLG_TC z_GIANT_HIP z_UKIBD_CD z_SPIRO-UKB_PEF z_WILLER_ATRIALFIBRI z_VGHRV_SDNN z_ICBP_SBP z_GLG_HDL,11,0.0626871605470878,0.0222490909090909,152934.99516552722,0.2313358725913795,0.5733177064733321
182,z_ISGEC_DIURNAL-IN z_GLG_HDL z_UKIBD_UC z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FVC z_SPIRO-UKB_FEV1 z_ICBP_SBP z_GLG_TG z_SPIRO-UKB_PEF,9,0.0646731128297258,0.0236194444444444,246347.8395287294,0.1797318914674525,0.5950392415887262
1445,z_GIANT_HIP z_TAGC_ASTHMA z_SSGAC_COLLEGE z_MAGIC_HOMA-B z_ISGEC_DIURNAL-IN z_NEIGHBORHOOD_POAG z_SPIRO-UKB_FVC z_GLG_HDL z_UKBIOBANK_ALAT,9,0.1219434243714489,0.0142957880277777,157963.7288433767,0.097487736094446,0.6351440382469806
1944,z_TAGC_ASTHMA z_GLG_TC z_MAGIC_2HGLU-ADJBMI z_MAGIC_FAST-INSULIN z_WILLER_ATRIALFIBRI z_SSGAC_COLLEGE z_ISGEC_DIURNAL-IN z_MAGIC_HOMA-B z_SPIRO-UKB_FEV1-FVC,9,0.0645102163671844,0.0090194444444444,123337.749006027,0.0873275459892302,0.6416114601273238
1428,z_IMSGC-WTCC2_MULTSCLE z_PGC_BIP z_MAGIC_FAST-INSULIN z_CARDIOGRAMPLUSC4D_CAD z_GIANT_HIP z_UKBIOBANK_POAG,6,0.1068441352448858,0.0126733333333333,76243.65133443482,0.159147851665268,0.7281644888393856
150,z_VAN-HEEL_CELIAC z_MAGIC_HBA1C z_MAGIC_2HGLU-ADJBMI,3,0.1294340950690383,0.0174999999999999,24785.325001635807,0.1155362667696048,0.6002841362666933
274,z_PGC_BIP z_ICBP_SBP z_GIANT_HIP z_GLG_LDL z_SPIRO-UKB_FEV1 z_ISGEC_SLEEP-MEAN z_UKIBD_UC z_ICBP_DBP z_UKIBD_CD z_VAN-HEEL_CELIAC z_MAGIC_2HGLU-ADJBMI z_SPIRO-UKB_FEV1-FVC,12,0.0695153298236532,0.0221272727272727,153646.11296067174,0.2421499659078964,0.6462169458043557
133,z_VGHRV_SDNN z_SPIRO-UKB_FEV1 z_SPIRO-UKB_FEV1-FVC z_GLG_HDL z_VAN-HEEL_CELIAC z_PGC_BIP z_SPIRO-UKB_PEF z_GEFOS_BMD-FOREARM z_GLG_TG z_UKBIOBANK_ALAT,10,0.0781496526754806,0.0185533333333333,189990.79353180985,0.14834882668588,0.5723473049474492
625,z_GLG_HDL z_SPIRO-UKB_FEV1-FVC z_GLG_LDL z_WILLER_ATRIALFIBRI z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_2HGLU-ADJBMI z_ICBP_DBP z_VAN-HEEL_CELIAC z_UKBIOBANK_POAG z_DIAGRAM_T2D z_ISGEC_SLEEP-MEAN,11,0.0946034984804523,0.0122963636363636,136864.04808980078,0.1509498682208043,0.6035377645402723
1334,z_UKBIOBANK_POAG z_IMSGC-WTCC2_MULTSCLE z_MAGIC_2HGLU-ADJBMI z_GLG_LDL z_VGHRV_SDNN z_ISGEC_SLEEP-SD z_NEIGHBORHOOD_POAG z_IGAP_AZ z_ICBP_DBP z_ISGEC_DIURNAL-IN z_MAGIC_FAST-INSULIN z_TAGC_ASTHMA,12,0.0945538220831093,0.0077681818181818,72649.03564810402,0.1167604478703124,0.6666392704974057
1278,z_ISGEC_SLEEP-MEAN z_SSGAC_COLLEGE z_SPIRO-UKB_PEF z_CARDIOGRAMPLUSC4D_CAD z_ISGEC_SLEEP-SD z_SPIRO-UKB_FEV1 z_BCAC_BREAST-CANCER-ERPOS z_ICBP_SBP z_SPIRO-UKB_FVC z_SPIRO-UKB_FEV1-FVC z_PGC_BIP,11,0.0855037656709843,0.01762,236644.1677777645,0.1507616301147009,0.7410848932841055
641,z_MAGIC_2HGLU-ADJBMI z_ICBP_DBP z_GLG_HDL z_MAGIC_FAST-INSULIN z_TAGC_ASTHMA z_MAGIC_HBA1C z_GEFOS_BMD-FOREARM z_C4D_CHD z_ISGEC_SLEEP-SD z_IGAP_AZ z_GLG_TG z_UKBIOBANK_ALAT,12,0.1550634761335628,0.0158355813484848,106494.37502418408,0.094676737091809,0.5862564612773997
1471,z_VAN-HEEL_CELIAC z_UKIBD_UC z_TAGC_ASTHMA,3,0.0716413235817607,0.0147,38751.56850668967,0.1895962040425665,0.5360869999645724
36,z_MAGIC_HBA1C z_DIAGRAM_T2D z_TAGC_ASTHMA z_SSGAC_COLLEGE z_BCAC_BREAST-CANCER-ERPOS z_C4D_CHD,6,0.2121136291435215,0.0136733333333333,89755.81943479214,0.0517372922116864,0.5840143317337964
1476,z_TAGC_ASTHMA z_GIANT_HIP z_MAGIC_FAST-INSULIN z_ISGEC_DIURNAL-IN z_UKIBD_CD z_SPIRO-UKB_PEF,6,0.087021521727048,0.0120599999999999,129641.17320133257,0.1523996983463591,0.686046589714835
1697,z_GLG_TC z_TAGC_ASTHMA z_MAGIC_HBA1C z_DIAGRAM_T2D z_IGAP_AZ z_IMSGC-WTCC2_MULTSCLE z_GLG_LDL,7,0.1141526306042843,0.0130755932857142,60081.715213907,0.0982385576043977,0.4831980138232068
1144,z_GLG_TC z_GLG_HDL z_IMSGC-WTCC2_MULTSCLE z_GLG_TG,4,0.0884884070994064,0.0291666666666666,79243.90770444386,0.1346552715905047,0.4454331496965424
1601,z_SPIRO-UKB_FEV1 z_PGC_BIP,2,0.0208041117370982,0.0035,208322.98015659556,0.263873901967294,0.7649789686500086
192,z_GLG_LDL z_WILLER_ATRIALFIBRI z_NEIGHBORHOOD_POAG z_TAGC_ASTHMA z_C4D_CHD z_GLG_TG z_GLG_TC z_GEFOS_BMD-FOREARM z_UKIBD_UC z_UKIBD_CD z_IMSGC-WTCC2_MULTSCLE,11,0.1154003610074032,0.022290909090909,66805.45203054749,0.1469200872830987,0.4959194871515098
1316,z_SSGAC_COLLEGE z_C4D_CHD z_TAGC_ASTHMA z_IGAP_AZ z_MAGIC_FAST-INSULIN z_MAGIC_HBA1C,6,0.1663614753168403,0.0110066666666666,60600.083381701465,0.0494602447159337,0.6354365108954337
845,z_UKIBD_CD z_SPIRO-UKB_PEF,2,0.0551897688832407,0.0136,217053.4322256991,0.29602996223388,0.5594205759183581
1268,z_ISGEC_SLEEP-SD z_SPIRO-UKB_PEF,2,0.041210212574476,0.0018,242271.5,0.0721643471173446,0.7657436043057917
383,z_VAN-HEEL_CELIAC z_ICBP_SBP z_VGHRV_SDNN,3,0.0833788109386555,0.0155999999999999,113296.65833496914,0.2199112384468608,0.6114702939860062
1307,z_MAGIC_HBA1C z_GLG_TC z_NEIGHBORHOOD_POAG,3,0.1924394827501134,0.015,51881.12827793105,0.0853806379083743,0.4763850235201798
1377,z_SPIRO-UKB_FVC z_GIANT_HIP z_UKBIOBANK_ALAT z_ISGEC_SLEEP-MEAN,4,0.0866251282826679,0.0135666666666666,267068.5,0.1345575915622025,0.7408854716352948
168,z_WILLER_ATRIALFIBRI z_GIANT_HIP z_ICBP_DBP,3,0.1593487546287759,0.0441999999999999,224233.52209921528,0.203761331485528,0.6278651256075946
594,z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FVC z_ICBP_SBP z_SPIRO-UKB_FEV1,4,0.051818316940652,0.0308333333333333,331729.0689055737,0.1830704849428388,0.6886005152031707
958,z_CARDIOGRAMPLUSC4D_CAD z_C4D_CHD z_BCAC_BREAST-CANCER-ERPOS,3,0.2826585241361947,0.0257666666666666,140379.5602208221,0.0318530947963322,0.6825843118926381
1408,z_DIAGRAM_T2D z_TAGC_ASTHMA z_GLG_HDL z_MAGIC_HBA1C z_MAGIC_2HGLU-ADJBMI z_C4D_CHD z_GLG_TC z_GLG_LDL z_UKIBD_CD z_UKBIOBANK_POAG,10,0.1366673607281095,0.0153210748666666,59062.8212693575,0.1348361504523458,0.5018382143227557
592,z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FVC,2,0.0278200239750478,0.0135,400102.0,0.1688233005882726,0.6327641933858442
1182,z_UKBIOBANK_POAG z_SSGAC_COLLEGE z_IGAP_AZ z_BCAC_BREAST-CANCER-ERPOS z_IMSGC-WTCC2_MULTSCLE z_MAGIC_FAST-INSULIN,6,0.1137541479724746,0.00562,88900.85730152547,0.0913860901707053,0.7237872912979717
1801,z_DIAGRAM_T2D z_GEFOS_BMD-FOREARM z_NEIGHBORHOOD_POAG z_IGAP_AZ z_MAGIC_HOMA-B z_GLG_TG z_WILLER_ATRIALFIBRI z_UKIBD_CD z_TAGC_ASTHMA z_MAGIC_HBA1C z_IMSGC-WTCC2_MULTSCLE,11,0.1218458315016612,0.0128106810727272,59290.165643653294,0.1146575041657396,0.4939800534284094
1400,z_PGC_BIP z_ISGEC_DIURNAL-IN z_CARDIOGRAMPLUSC4D_CAD z_GIANT_HIP z_ISGEC_SLEEP-MEAN z_SPIRO-UKB_FEV1-FVC z_ISGEC_SLEEP-SD z_ICBP_DBP z_BCAC_BREAST-CANCER-ERPOS,9,0.0694501616857693,0.0109269642499999,167381.53839504547,0.1511892195903571,0.7710492852189827
294,z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FEV1 z_SPIRO-UKB_FVC z_GLG_TG z_GLG_HDL z_GEFOS_BMD-FOREARM,6,0.0826064408550955,0.0289933333333333,234205.16666666663,0.1286495461550943,0.5262108653001604
791,z_SSGAC_COLLEGE z_SPIRO-UKB_FVC z_IMSGC-WTCC2_MULTSCLE z_ICBP_DBP z_GLG_LDL z_MAGIC_FAST-INSULIN z_UKBIOBANK_POAG z_IGAP_AZ z_GEFOS_BMD-FOREARM z_GIANT_HIP z_GLG_TC z_SPIRO-UKB_FEV1-FVC,12,0.0864742810515255,0.0111378787878787,146158.15568223817,0.1410714520107773,0.6223449420906045
58,z_ISGEC_SLEEP-SD z_IGAP_AZ z_BCAC_BREAST-CANCER-ERPOS z_NEIGHBORHOOD_POAG z_MAGIC_HOMA-B z_IMSGC-WTCC2_MULTSCLE z_CARDIOGRAMPLUSC4D_CAD z_TAGC_ASTHMA z_MAGIC_FAST-INSULIN z_C4D_CHD,10,0.1275981228024508,0.0087244444444444,75052.24011839958,0.0569925123866621,0.6553178811045668
284,z_ISGEC_SLEEP-MEAN z_ICBP_SBP z_SSGAC_COLLEGE z_SPIRO-UKB_PEF z_ICBP_DBP z_SPIRO-UKB_FVC z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FEV1 z_CARDIOGRAMPLUSC4D_CAD z_ISGEC_DIURNAL-IN z_MAGIC_FAST-INSULIN,11,0.0974377671472767,0.0262454545454545,245852.6917836294,0.1639458997423937,0.7306692360068265
1335,z_GLG_TG z_VGHRV_SDNN z_SPIRO-UKB_FEV1 z_GIANT_HIP z_GLG_HDL z_MAGIC_2HGLU-ADJBMI z_UKBIOBANK_ALAT z_ICBP_SBP z_UKIBD_CD,9,0.0955452129622085,0.0181916666666666,172886.87382793313,0.1826763020618484,0.5802105538041229
759,z_GLG_TC z_C4D_CHD z_DIAGRAM_T2D z_UKIBD_UC z_GLG_TG z_GEFOS_BMD-FOREARM z_MAGIC_2HGLU-ADJBMI z_IGAP_AZ,8,0.159396788753913,0.0194607142857142,46104.444012723616,0.1042583013096612,0.5266574898619478
1937,z_WILLER_ATRIALFIBRI z_UKIBD_CD z_MAGIC_2HGLU-ADJBMI z_PGC_BIP,4,0.0540024681989385,0.0185166666666666,73500.84776555875,0.2538079260462135,0.6648391873208915
1343,z_VGHRV_SDNN z_MAGIC_2HGLU-ADJBMI z_WILLER_ATRIALFIBRI z_UKIBD_CD z_IMSGC-WTCC2_MULTSCLE z_GLG_TG z_MAGIC_HOMA-B z_IGAP_AZ z_MAGIC_HBA1C z_UKBIOBANK_POAG z_DIAGRAM_T2D z_GLG_LDL,12,0.0938958793569924,0.0102967796818181,63974.66414545957,0.125794382567689,0.5204863510961183
526,z_MAGIC_FAST-INSULIN z_PGC_BIP z_UKIBD_CD z_ICBP_SBP z_ISGEC_DIURNAL-IN,5,0.0555818362243514,0.01514,96103.16495291788,0.2713259669854389,0.7522978220017557
482,z_DIAGRAM_T2D z_NEIGHBORHOOD_POAG z_MAGIC_HBA1C z_TAGC_ASTHMA z_UKIBD_CD z_UKIBD_UC z_GLG_LDL z_WILLER_ATRIALFIBRI,8,0.1026289376303069,0.0167142857142857,70739.52711345143,0.1558030006300269,0.484469822320831
1324,z_ICBP_SBP z_VAN-HEEL_CELIAC z_GLG_HDL z_MAGIC_2HGLU-ADJBMI z_ISGEC_SLEEP-MEAN,5,0.1042720199831351,0.01599,102528.99500098148,0.1868009468409729,0.6688643607906695
1726,z_DIAGRAM_T2D z_ISGEC_SLEEP-MEAN z_SSGAC_COLLEGE z_ICBP_SBP z_GEFOS_BMD-FOREARM z_UKBIOBANK_ALAT z_ISGEC_DIURNAL-IN z_MAGIC_HBA1C z_C4D_CHD z_TAGC_ASTHMA z_ICBP_DBP z_SPIRO-UKB_FEV1-FVC,12,0.1382164347590501,0.021280303030303,160384.3867488715,0.1391437097269526,0.6160548100789176
1589,z_WILLER_ATRIALFIBRI z_UKBIOBANK_POAG z_BCAC_BREAST-CANCER-ERPOS z_CARDIOGRAMPLUSC4D_CAD z_NEIGHBORHOOD_POAG z_UKIBD_UC z_VGHRV_SDNN,7,0.0742259815991077,0.0074666666666666,108362.58562684864,0.1106132008834158,0.612440764845329
587,z_SSGAC_COLLEGE z_ICBP_DBP,2,0.0870183383059183,0.0158,212791.5,0.2356425163713894,0.727064434207636
85,z_MAGIC_HBA1C z_ISGEC_DIURNAL-IN z_GEFOS_BMD-FOREARM z_PGC_BIP z_DIAGRAM_T2D z_SSGAC_COLLEGE z_MAGIC_2HGLU-ADJBMI z_UKIBD_UC z_UKBIOBANK_POAG z_GLG_TG,10,0.1126594908476524,0.0152133333333333,53202.68941370873,0.1382771421075048,0.6160486268503406
1385,z_UKBIOBANK_ALAT z_UKIBD_UC z_SPIRO-UKB_FVC,3,0.0384310865836917,0.0098,291176.18525285483,0.1949314513326778,0.5977188883541729
1725,z_VGHRV_SDNN z_GEFOS_BMD-FOREARM z_GLG_TC z_GLG_TG,4,0.0610326168725515,0.0175,57076.75,0.084074173858062,0.447340989824493
973,z_IMSGC-WTCC2_MULTSCLE z_WILLER_ATRIALFIBRI z_DIAGRAM_T2D z_VGHRV_SDNN z_GLG_HDL z_UKIBD_UC z_UKIBD_CD z_MAGIC_2HGLU-ADJBMI z_TAGC_ASTHMA z_GLG_TG z_MAGIC_HBA1C z_C4D_CHD,12,0.1457708715704258,0.0199641792121212,62295.02152598682,0.1364958070494531,0.5083588476744398
1137,z_BCAC_BREAST-CANCER-ERPOS z_IGAP_AZ z_SPIRO-UKB_FEV1 z_WILLER_ATRIALFIBRI z_SPIRO-UKB_PEF,5,0.0728733251303697,0.01501,260556.2744066608,0.0877155723579458,0.6502094427456256
355,z_VGHRV_SDNN z_UKBIOBANK_POAG z_GEFOS_BMD-FOREARM z_GLG_TG z_NEIGHBORHOOD_POAG z_WILLER_ATRIALFIBRI z_MAGIC_HBA1C z_GLG_LDL,8,0.0913592125075431,0.0109571428571428,72840.83229839473,0.0900034201412496,0.4937855931392061
293,z_TAGC_ASTHMA z_UKBIOBANK_POAG z_NEIGHBORHOOD_POAG z_SSGAC_COLLEGE z_ISGEC_SLEEP-SD z_IGAP_AZ z_CARDIOGRAMPLUSC4D_CAD z_IMSGC-WTCC2_MULTSCLE z_DIAGRAM_T2D,9,0.131508915334444,0.0091027777777777,69800.85646742053,0.0925704194665801,0.6586186242289215
545,z_MAGIC_2HGLU-ADJBMI z_NEIGHBORHOOD_POAG z_MAGIC_HOMA-B z_GLG_HDL z_UKBIOBANK_POAG z_GLG_TG z_GEFOS_BMD-FOREARM,7,0.1310312927726678,0.0157523809523809,48818.584584216005,0.0929854799510714,0.5155884281934189
267,z_SSGAC_COLLEGE z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_HBA1C z_IGAP_AZ,4,0.2101332266809229,0.01375,95642.0349333218,0.0556645804159107,0.6487894942290839
189,z_GLG_LDL z_BCAC_BREAST-CANCER-ERPOS z_UKIBD_UC z_IMSGC-WTCC2_MULTSCLE z_GLG_TC z_ISGEC_DIURNAL-IN,6,0.1279879005262243,0.0177666666666666,94783.07703310576,0.1383928645500324,0.5952731219192103
1761,z_SSGAC_COLLEGE z_C4D_CHD z_MAGIC_HOMA-B,3,0.160496923789286,0.0121,67740.93180674933,0.0415342251423417,0.6121363378127547
702,z_WILLER_ATRIALFIBRI z_VAN-HEEL_CELIAC z_NEIGHBORHOOD_POAG z_GLG_LDL z_IGAP_AZ,5,0.0652872241071802,0.00778,80272.89124994198,0.1098285264808039,0.5852298595332885
384,z_DIAGRAM_T2D z_TAGC_ASTHMA z_NEIGHBORHOOD_POAG z_IGAP_AZ z_GEFOS_BMD-FOREARM z_GLG_TG z_MAGIC_HOMA-B z_MAGIC_2HGLU-ADJBMI z_UKIBD_CD z_MAGIC_HBA1C z_GLG_LDL z_IMSGC-WTCC2_MULTSCLE,12,0.1166422744013943,0.0117498099848484,44925.43798187837,0.1141640353559776,0.5043586769132349
1132,z_NEIGHBORHOOD_POAG z_MAGIC_HBA1C z_VAN-HEEL_CELIAC z_UKIBD_UC z_TAGC_ASTHMA z_GLG_TC z_VGHRV_SDNN z_IGAP_AZ z_UKBIOBANK_POAG z_GLG_HDL z_GLG_TG z_MAGIC_2HGLU-ADJBMI,12,0.0976633845018377,0.011978005590909,51688.19397691206,0.1189445472277825,0.5340887267136462
993,z_NEIGHBORHOOD_POAG z_MAGIC_HBA1C z_C4D_CHD z_UKBIOBANK_POAG,4,0.3060055729473405,0.0227833333333333,38057.72187744002,0.086267188275563,0.5576154789359185
1765,z_PGC_BIP z_UKBIOBANK_ALAT z_SPIRO-UKB_FEV1 z_GIANT_HIP z_BCAC_BREAST-CANCER-ERPOS z_ICBP_DBP,6,0.0541165845854049,0.0097913808666666,254346.8726559143,0.1973205030361074,0.7015257914901563
1826,z_DIAGRAM_T2D z_UKBIOBANK_POAG z_CARDIOGRAMPLUSC4D_CAD z_NEIGHBORHOOD_POAG z_BCAC_BREAST-CANCER-ERPOS z_IMSGC-WTCC2_MULTSCLE z_MAGIC_HBA1C z_MAGIC_HOMA-B,8,0.1758989395927993,0.0114352663928571,77930.03486988983,0.0858214551182551,0.5649951770000551
1187,z_GIANT_HIP z_VGHRV_SDNN z_WILLER_ATRIALFIBRI z_VAN-HEEL_CELIAC z_UKBIOBANK_ALAT z_GLG_TC z_MAGIC_2HGLU-ADJBMI,7,0.1074511204150545,0.0178142857142857,137499.6487575076,0.1197175247735278,0.613586087477753
1249,z_SPIRO-UKB_FEV1-FVC z_GLG_TC z_GIANT_HIP z_GLG_HDL,4,0.085133557276738,0.01565,185299.0,0.1353765020144585,0.5270398492805137
1261,z_ISGEC_SLEEP-SD z_GIANT_HIP,2,0.1759263121517122,0.0117,114948.5,0.072534247377043,0.8294793259320987
576,z_ICBP_SBP z_SSGAC_COLLEGE z_UKIBD_UC,3,0.0561187044585984,0.0115333333333333,153914.1852528548,0.2499482226099366,0.6488746208757793
1391,z_C4D_CHD z_GLG_HDL z_IGAP_AZ z_NEIGHBORHOOD_POAG z_GLG_TG z_GLG_TC z_VGHRV_SDNN,7,0.1350856609312673,0.017447619047619,58759.387195343545,0.0807143198926419,0.5207818772160989
1475,z_SSGAC_COLLEGE z_CARDIOGRAMPLUSC4D_CAD z_ISGEC_SLEEP-MEAN z_ICBP_SBP z_UKBIOBANK_ALAT z_ISGEC_SLEEP-SD,6,0.1454740423492998,0.0168933333333333,199285.4349366539,0.1331787892746872,0.7664887291561993
311,z_ICBP_SBP z_UKBIOBANK_ALAT z_SPIRO-UKB_FEV1 z_ISGEC_SLEEP-SD z_SPIRO-UKB_FVC z_PGC_BIP z_BCAC_BREAST-CANCER-ERPOS z_SSGAC_COLLEGE z_ICBP_DBP,9,0.0803533923463235,0.0224555555555555,254527.91510394288,0.1908991457817186,0.7303073843548513
491,z_UKBIOBANK_ALAT z_ICBP_SBP z_PGC_BIP z_ISGEC_DIURNAL-IN z_ICBP_DBP z_MAGIC_FAST-INSULIN z_SPIRO-UKB_FEV1 z_SSGAC_COLLEGE z_GIANT_HIP z_ISGEC_SLEEP-SD z_SPIRO-UKB_FEV1-FVC z_BCAC_BREAST-CANCER-ERPOS,12,0.0898337104940156,0.0174041017121212,213929.1863279572,0.1649151795443754,0.7453722563817959
1918,z_MAGIC_HOMA-B z_NEIGHBORHOOD_POAG z_UKBIOBANK_POAG z_MAGIC_FAST-INSULIN z_IGAP_AZ z_DIAGRAM_T2D z_CARDIOGRAMPLUSC4D_CAD z_SSGAC_COLLEGE z_BCAC_BREAST-CANCER-ERPOS z_MAGIC_HBA1C,10,0.1495706862465509,0.0111066666666666,81811.41782547068,0.0651939821887581,0.6320533879294423
611,z_SPIRO-UKB_FEV1-FVC z_GLG_LDL z_IMSGC-WTCC2_MULTSCLE z_GLG_TC z_MAGIC_2HGLU-ADJBMI z_IGAP_AZ z_CARDIOGRAMPLUSC4D_CAD,7,0.0863763014370059,0.0120619047619047,120724.39579300895,0.1154662043668354,0.5847619635952243
1359,z_GLG_HDL z_SPIRO-UKB_FEV1 z_GLG_LDL z_GLG_TC z_ICBP_SBP z_VGHRV_SDNN z_SPIRO-UKB_PEF z_WILLER_ATRIALFIBRI,8,0.0627738925603709,0.0172035714285714,206387.3207872057,0.1484198562023728,0.528850695419464
422,z_VGHRV_SDNN z_UKIBD_UC z_SPIRO-UKB_FEV1-FVC z_PGC_BIP z_GIANT_HIP z_UKBIOBANK_ALAT z_GLG_TC z_VAN-HEEL_CELIAC z_MAGIC_2HGLU-ADJBMI z_WILLER_ATRIALFIBRI z_UKIBD_CD z_SPIRO-UKB_PEF,12,0.0694776689312947,0.017930303030303,154117.49348547557,0.1872614053643158,0.6072309666139015
1539,z_TAGC_ASTHMA z_GLG_TC z_MAGIC_HBA1C z_GLG_HDL z_GLG_TG z_IMSGC-WTCC2_MULTSCLE z_UKIBD_UC z_UKBIOBANK_POAG z_VAN-HEEL_CELIAC,9,0.0814763852126565,0.0130593285555555,60129.11595484037,0.1488955129567141,0.487215139439201
713,z_SPIRO-UKB_FVC z_ISGEC_SLEEP-SD z_ICBP_SBP,3,0.0450003523651912,0.0078333333333333,261189.0,0.1938270008909437,0.7485174529559334
1875,z_VAN-HEEL_CELIAC z_MAGIC_HBA1C z_IMSGC-WTCC2_MULTSCLE z_WILLER_ATRIALFIBRI z_TAGC_ASTHMA z_UKIBD_UC,6,0.0966928307757724,0.0126391639333333,69263.81710591503,0.1491762309242631,0.518390699660841
349,z_UKIBD_CD z_GLG_LDL z_SPIRO-UKB_PEF,3,0.0510924138579029,0.0094666666666666,178002.28815046605,0.2339849547481714,0.5084287148397412
1781,z_ICBP_DBP z_SSGAC_COLLEGE z_SPIRO-UKB_FVC z_ICBP_SBP z_SPIRO-UKB_PEF z_PGC_BIP z_UKBIOBANK_ALAT z_ISGEC_DIURNAL-IN z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FEV1,10,0.075444915979674,0.0240133333333333,269116.9235935486,0.1912115540924553,0.7201343239763441
866,z_PGC_BIP z_ICBP_SBP,2,0.0197019562279949,0.0022,157783.98015659553,0.3738883466737839,0.7285907047677492
352,z_ICBP_DBP z_ICBP_SBP z_GIANT_HIP z_UKBIOBANK_ALAT z_ISGEC_SLEEP-SD z_SSGAC_COLLEGE z_ISGEC_SLEEP-MEAN,7,0.0997818734623576,0.0269857142857142,211031.42857142855,0.1798686785536212,0.7471756776165807
92,z_MAGIC_HOMA-B z_VGHRV_SDNN z_GLG_TC z_UKIBD_CD z_TAGC_ASTHMA z_DIAGRAM_T2D,6,0.0604448130569876,0.0073066666666666,51866.45166960135,0.1406869962214411,0.4655853328128636
1313,z_MAGIC_2HGLU-ADJBMI z_ICBP_DBP z_UKBIOBANK_ALAT z_ICBP_SBP z_VGHRV_SDNN z_UKIBD_CD z_GLG_LDL z_VAN-HEEL_CELIAC z_GLG_HDL z_SPIRO-UKB_FEV1-FVC,10,0.0858049350221005,0.0204866666666666,172560.58394563055,0.2153353530730189,0.5644313524752687
724,z_UKIBD_UC z_MAGIC_HBA1C z_IGAP_AZ z_IMSGC-WTCC2_MULTSCLE z_SPIRO-UKB_FEV1-FVC z_MAGIC_HOMA-B z_CARDIOGRAMPLUSC4D_CAD z_WILLER_ATRIALFIBRI z_NEIGHBORHOOD_POAG z_SPIRO-UKB_FVC z_TAGC_ASTHMA,11,0.097427630551371,0.0095852265272727,133880.13201796936,0.1119596693288894,0.553271697514938
674,z_C4D_CHD z_MAGIC_FAST-INSULIN z_ISGEC_SLEEP-SD z_SSGAC_COLLEGE z_NEIGHBORHOOD_POAG z_DIAGRAM_T2D z_MAGIC_HBA1C z_UKBIOBANK_POAG z_TAGC_ASTHMA z_CARDIOGRAMPLUSC4D_CAD z_BCAC_BREAST-CANCER-ERPOS z_MAGIC_HOMA-B,12,0.1603936679052523,0.0116636363636363,79475.46819318236,0.060375530631865,0.6361010086424089
134,z_GLG_TC z_UKIBD_UC z_UKBIOBANK_ALAT z_MAGIC_2HGLU-ADJBMI z_GLG_TG z_ICBP_DBP z_GLG_LDL z_ISGEC_SLEEP-MEAN z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FVC z_GEFOS_BMD-FOREARM z_UKIBD_CD,12,0.0698459658906501,0.0174545454545454,167286.45168416356,0.1860216803874005,0.5629060760943365
1979,z_UKIBD_CD z_GLG_TC z_UKIBD_UC z_VGHRV_SDNN z_C4D_CHD z_MAGIC_2HGLU-ADJBMI z_WILLER_ATRIALFIBRI z_GLG_TG z_IGAP_AZ,9,0.1084506721610825,0.0209027777777777,67881.03467124667,0.1456995376725871,0.5450086687589891
1365,z_SPIRO-UKB_PEF z_ICBP_DBP z_ISGEC_DIURNAL-IN z_ICBP_SBP z_ISGEC_SLEEP-MEAN z_GLG_TG z_VGHRV_SDNN z_SPIRO-UKB_FEV1-FVC z_GIANT_HIP z_WILLER_ATRIALFIBRI z_UKIBD_CD z_UKBIOBANK_ALAT,12,0.0661944279501252,0.0195045454545454,211509.7025624203,0.1891701580319387,0.6275561519240264
30,z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FVC,2,0.1159499384673592,0.0055,313895.1378111474,0.0861479943094108,0.7301304969043543
266,z_MAGIC_HBA1C z_CARDIOGRAMPLUSC4D_CAD z_DIAGRAM_T2D z_ISGEC_SLEEP-SD z_SSGAC_COLLEGE z_MAGIC_HOMA-B z_IGAP_AZ z_BCAC_BREAST-CANCER-ERPOS z_UKBIOBANK_POAG,9,0.1390553750574862,0.0082055555555555,93616.42149121262,0.0623098922767981,0.6375400587757175
1752,z_PGC_BIP z_GLG_TG z_VAN-HEEL_CELIAC,3,0.0644102028921396,0.0248333333333333,41965.311772699504,0.2225416510428823,0.632126653044214
187,z_TAGC_ASTHMA z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_2HGLU-ADJBMI z_SPIRO-UKB_FEV1-FVC z_WILLER_ATRIALFIBRI z_SSGAC_COLLEGE z_VAN-HEEL_CELIAC z_MAGIC_HBA1C z_NEIGHBORHOOD_POAG z_ISGEC_DIURNAL-IN,10,0.0981552384265272,0.0104266666666666,115812.97105128672,0.099150644605742,0.6489238664289725
531,z_C4D_CHD z_BCAC_BREAST-CANCER-ERPOS z_MAGIC_HOMA-B z_MAGIC_FAST-INSULIN z_ISGEC_SLEEP-SD z_UKBIOBANK_POAG z_SSGAC_COLLEGE z_IGAP_AZ z_MAGIC_HBA1C z_IMSGC-WTCC2_MULTSCLE z_TAGC_ASTHMA z_CARDIOGRAMPLUSC4D_CAD,12,0.1376461137428259,0.0091907190757575,80932.6436338268,0.0660858025587894,0.6475386071312337
852,z_SPIRO-UKB_FEV1 z_VAN-HEEL_CELIAC z_CARDIOGRAMPLUSC4D_CAD z_ISGEC_SLEEP-SD z_IGAP_AZ z_ICBP_DBP z_MAGIC_FAST-INSULIN z_DIAGRAM_T2D,8,0.123420132753006,0.0125249999999999,136531.09819347592,0.1307182914265283,0.6972924112316514
554,z_ICBP_DBP z_GLG_HDL z_UKIBD_CD z_GEFOS_BMD-FOREARM z_MAGIC_2HGLU-ADJBMI z_UKIBD_UC z_ISGEC_DIURNAL-IN z_GLG_LDL z_SPIRO-UKB_FEV1,9,0.0909349803272544,0.0187583333333333,119723.15780110697,0.2000493782597522,0.5769935101935953
73,z_NEIGHBORHOOD_POAG z_UKBIOBANK_POAG z_SSGAC_COLLEGE z_IGAP_AZ z_IMSGC-WTCC2_MULTSCLE z_CARDIOGRAMPLUSC4D_CAD z_C4D_CHD,7,0.1705445935337769,0.0136523809523809,66686.09400868895,0.0968722619207869,0.6677866962924901
981,z_ISGEC_SLEEP-SD z_PGC_BIP z_ICBP_SBP z_GIANT_HIP z_SPIRO-UKB_FEV1 z_SSGAC_COLLEGE z_SPIRO-UKB_PEF z_ISGEC_SLEEP-MEAN z_ISGEC_DIURNAL-IN z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_FAST-INSULIN z_SPIRO-UKB_FEV1-FVC,12,0.102455964886693,0.0169742424242424,187641.21416109288,0.145103402979371,0.7692365361200699
1266,z_NEIGHBORHOOD_POAG z_ISGEC_DIURNAL-IN z_GLG_TC z_ICBP_SBP z_VGHRV_SDNN z_UKBIOBANK_POAG z_UKIBD_CD,7,0.0864823923903655,0.0118857142857142,88105.27950584433,0.2037643407843568,0.6126096491260602
204,z_GEFOS_BMD-FOREARM z_MAGIC_HBA1C z_UKIBD_UC z_UKBIOBANK_POAG z_DIAGRAM_T2D z_IGAP_AZ z_MAGIC_HOMA-B z_WILLER_ATRIALFIBRI z_VAN-HEEL_CELIAC z_NEIGHBORHOOD_POAG z_IMSGC-WTCC2_MULTSCLE,11,0.1301236813561674,0.0131270447090909,51338.63826285288,0.1198322816789971,0.5335422674518362
669,z_TAGC_ASTHMA z_WILLER_ATRIALFIBRI z_MAGIC_FAST-INSULIN z_UKIBD_CD z_MAGIC_HBA1C z_CARDIOGRAMPLUSC4D_CAD z_IGAP_AZ z_NEIGHBORHOOD_POAG z_GLG_LDL z_GLG_TG,10,0.0855037918910553,0.0098711111111111,84208.11300727216,0.1105935050596514,0.5532720715393628
1607,z_DIAGRAM_T2D z_GIANT_HIP z_UKBIOBANK_POAG z_SSGAC_COLLEGE,4,0.0901940893709414,0.0099333333333333,93419.84451633292,0.1190853263858657,0.6753116877326484
1806,z_ISGEC_DIURNAL-IN z_GLG_HDL z_VAN-HEEL_CELIAC z_ICBP_DBP z_SPIRO-UKB_PEF,5,0.0552105633991044,0.0088399999999999,179364.1950009815,0.1899145237957183,0.6418745236680703
43,z_SSGAC_COLLEGE z_IGAP_AZ z_DIAGRAM_T2D z_C4D_CHD,4,0.2404053150017727,0.0178666666666666,60951.49908580611,0.0616499020872246,0.6491691385672476
586,z_WILLER_ATRIALFIBRI z_UKIBD_CD z_MAGIC_2HGLU-ADJBMI z_DIAGRAM_T2D z_VAN-HEEL_CELIAC z_SPIRO-UKB_FEV1 z_ISGEC_DIURNAL-IN,7,0.0936724541611467,0.0173666666666666,116453.29665193774,0.1764493197388772,0.6540678629534769
1031,z_TAGC_ASTHMA z_IMSGC-WTCC2_MULTSCLE z_UKBIOBANK_POAG z_C4D_CHD,4,0.0997630796089275,0.00755,46030.57706258487,0.1204770077222811,0.5674689217726405
42,z_SSGAC_COLLEGE z_UKBIOBANK_POAG z_C4D_CHD z_MAGIC_FAST-INSULIN z_MAGIC_HBA1C z_TAGC_ASTHMA z_ISGEC_SLEEP-SD z_DIAGRAM_T2D z_MAGIC_HOMA-B z_BCAC_BREAST-CANCER-ERPOS z_IGAP_AZ z_IMSGC-WTCC2_MULTSCLE,12,0.1462904334549347,0.0095982948333333,70693.31539963423,0.0689505091990335,0.6284435141738437
631,z_ISGEC_DIURNAL-IN z_MAGIC_FAST-INSULIN z_SSGAC_COLLEGE z_TAGC_ASTHMA z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_PEF z_GEFOS_BMD-FOREARM z_NEIGHBORHOOD_POAG z_ICBP_SBP z_VGHRV_SDNN z_MAGIC_2HGLU-ADJBMI,11,0.0887174017080468,0.011650909090909,135398.3235991264,0.1123651339441087,0.6611010503555135
1812,z_MAGIC_HOMA-B z_IGAP_AZ z_MAGIC_FAST-INSULIN z_IMSGC-WTCC2_MULTSCLE z_CARDIOGRAMPLUSC4D_CAD z_TAGC_ASTHMA z_NEIGHBORHOOD_POAG z_DIAGRAM_T2D z_MAGIC_HBA1C,9,0.1442456397786799,0.0110774294166666,54931.55566122951,0.0712746227441069,0.5706680487576156
1487,z_MAGIC_FAST-INSULIN z_BCAC_BREAST-CANCER-ERPOS z_IMSGC-WTCC2_MULTSCLE z_MAGIC_HBA1C z_UKBIOBANK_POAG z_MAGIC_HOMA-B z_ISGEC_SLEEP-SD z_CARDIOGRAMPLUSC4D_CAD,8,0.117245686265455,0.0079066949642857,87518.15291446408,0.0715269821135294,0.6488931223925881
1077,z_GLG_HDL z_ISGEC_DIURNAL-IN,2,0.1781086240719913,0.019,92470.5,0.1088513282084233,0.6640416618746376
583,z_GLG_TG z_CARDIOGRAMPLUSC4D_CAD z_UKBIOBANK_POAG z_WILLER_ATRIALFIBRI z_MAGIC_HOMA-B z_ICBP_SBP z_MAGIC_HBA1C z_UKIBD_UC z_GLG_HDL z_SSGAC_COLLEGE z_GEFOS_BMD-FOREARM,11,0.1187988331456894,0.0163963636363636,110179.85808471388,0.1290701784355871,0.5255173155182271
178,z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_PEF z_UKBIOBANK_ALAT z_SSGAC_COLLEGE z_SPIRO-UKB_FEV1 z_ICBP_DBP z_ISGEC_DIURNAL-IN z_ISGEC_SLEEP-SD,8,0.0850799316008282,0.0121214285714285,257492.53445278684,0.1279870972722485,0.7432548186209785
1401,z_GLG_LDL z_UKIBD_CD z_GLG_TC z_DIAGRAM_T2D z_GLG_TG z_WILLER_ATRIALFIBRI z_MAGIC_HBA1C z_GLG_HDL z_NEIGHBORHOOD_POAG z_MAGIC_2HGLU-ADJBMI z_VGHRV_SDNN,11,0.1118975085017193,0.0172618181818181,72545.22603567726,0.1259088211453398,0.4951420581368397
884,z_SPIRO-UKB_FEV1 z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FVC,3,0.0188084719885601,0.0740333333333333,400102.0,0.169208377348774,0.649662394718645
1516,z_DIAGRAM_T2D z_VAN-HEEL_CELIAC z_TAGC_ASTHMA z_SPIRO-UKB_FVC z_GLG_TG z_NEIGHBORHOOD_POAG z_UKIBD_CD z_WILLER_ATRIALFIBRI z_ISGEC_DIURNAL-IN z_MAGIC_2HGLU-ADJBMI z_GLG_TC z_MAGIC_FAST-INSULIN,12,0.0884271309002544,0.013630303030303,94547.80301282956,0.1370084164929212,0.614359797542807
1864,z_NEIGHBORHOOD_POAG z_ICBP_SBP z_SPIRO-UKB_PEF,3,0.016896272244308,0.0042,237649.12827793104,0.1968689329027673,0.6200329517454207
1680,z_ICBP_SBP z_UKBIOBANK_ALAT z_ISGEC_SLEEP-MEAN z_PGC_BIP,4,0.0624695162793021,0.0164833333333333,209570.99007829776,0.2501241238608238,0.7409103407380914
698,z_MAGIC_HBA1C z_TAGC_ASTHMA z_BCAC_BREAST-CANCER-ERPOS,3,0.0954172818222668,0.0037666666666666,113799.1501262973,0.0381950408393131,0.523531293171004
996,z_SPIRO-UKB_PEF z_GLG_TG z_ISGEC_DIURNAL-IN z_GLG_LDL z_ICBP_SBP z_SPIRO-UKB_FVC z_ICBP_DBP,7,0.0561427679571051,0.0270714285714285,239929.57142857145,0.1971836904651991,0.6076068570976771
129,z_CARDIOGRAMPLUSC4D_CAD z_UKBIOBANK_POAG,2,0.0366301648544401,0.0019,112268.1584378212,0.1250855290987236,0.6655790096469544
228,z_ICBP_SBP z_GLG_LDL,2,0.1063007560448538,0.0127,199462.0,0.2499511800297555,0.5085636311511174
56,z_SPIRO-UKB_FEV1-FVC z_GLG_TC,2,0.0017614861472957,0.0017,247778.0,0.1524883305139573,0.4866636027243571
1618,z_SPIRO-UKB_FVC z_UKIBD_UC z_UKBIOBANK_ALAT z_GLG_HDL z_UKIBD_CD z_GLG_LDL,6,0.1185915991520768,0.0267466666666666,184602.9033683271,0.2141521482124616,0.5165959914612099
393,z_C4D_CHD z_IGAP_AZ z_SSGAC_COLLEGE z_MAGIC_FAST-INSULIN z_NEIGHBORHOOD_POAG z_IMSGC-WTCC2_MULTSCLE z_DIAGRAM_T2D z_ISGEC_SLEEP-SD,8,0.1867077277789749,0.0124642857142857,51624.25149934913,0.0726619807502043,0.7002621581522893
1193,z_MAGIC_HOMA-B z_UKBIOBANK_POAG z_C4D_CHD z_BCAC_BREAST-CANCER-ERPOS,4,0.1244409752444002,0.0062499999999999,91478.94457456542,0.0625705348936645,0.5869786483450414
627,z_GEFOS_BMD-FOREARM z_MAGIC_2HGLU-ADJBMI z_UKIBD_UC z_GLG_TC z_IGAP_AZ z_UKIBD_CD z_IMSGC-WTCC2_MULTSCLE z_VAN-HEEL_CELIAC z_GLG_TG z_MAGIC_HBA1C z_VGHRV_SDNN,11,0.1188245020551162,0.0203961356181818,40385.0505587281,0.1533657828612879,0.5293114277361141
854,z_DIAGRAM_T2D z_SPIRO-UKB_FEV1 z_SPIRO-UKB_PEF,3,0.1030220590195466,0.0415,280101.5569365376,0.127252225220473,0.5907345450548832
1493,z_BCAC_BREAST-CANCER-ERPOS z_IGAP_AZ z_IMSGC-WTCC2_MULTSCLE z_TAGC_ASTHMA z_CARDIOGRAMPLUSC4D_CAD z_SSGAC_COLLEGE z_C4D_CHD z_NEIGHBORHOOD_POAG z_MAGIC_HBA1C z_MAGIC_FAST-INSULIN,10,0.1549462641340325,0.0100486102,79282.24011839957,0.0635988732341105,0.6483458856226025
1039,z_ISGEC_SLEEP-MEAN z_SSGAC_COLLEGE z_SPIRO-UKB_FVC z_ISGEC_DIURNAL-IN z_SPIRO-UKB_PEF z_CARDIOGRAMPLUSC4D_CAD z_ICBP_DBP z_PGC_BIP z_ICBP_SBP z_UKBIOBANK_ALAT,10,0.1004557420384571,0.0237822222222222,231180.05699331145,0.1915867066834796,0.7385989249836966
1912,z_MAGIC_HOMA-B z_C4D_CHD z_IMSGC-WTCC2_MULTSCLE z_IGAP_AZ z_UKBIOBANK_POAG z_TAGC_ASTHMA z_MAGIC_HBA1C z_BCAC_BREAST-CANCER-ERPOS z_DIAGRAM_T2D z_ISGEC_SLEEP-SD z_NEIGHBORHOOD_POAG,11,0.1518728979456498,0.0092815901636363,62672.37905721853,0.072915583133156,0.5867487616838086
1346,z_VGHRV_SDNN z_SSGAC_COLLEGE z_ICBP_SBP z_NEIGHBORHOOD_POAG z_SPIRO-UKB_PEF z_TAGC_ASTHMA z_GLG_TC z_DIAGRAM_T2D z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FEV1 z_GLG_TG z_GLG_HDL,12,0.1032566803527396,0.0137771187878787,157923.87550185816,0.1167607939942046,0.5688866513819743
870,z_VGHRV_SDNN z_IMSGC-WTCC2_MULTSCLE z_GLG_LDL z_GLG_HDL z_CARDIOGRAMPLUSC4D_CAD z_SPIRO-UKB_FEV1 z_UKBIOBANK_POAG z_GLG_TG z_UKIBD_CD z_UKIBD_UC z_ISGEC_SLEEP-SD z_ICBP_SBP,12,0.1015086062445222,0.0160166666666666,118983.44732528173,0.180621448723582,0.570134692527162
799,z_SPIRO-UKB_PEF z_GIANT_HIP z_UKBIOBANK_ALAT z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FEV1 z_SPIRO-UKB_FEV1-FVC z_MAGIC_FAST-INSULIN z_ISGEC_SLEEP-SD z_ICBP_DBP z_SSGAC_COLLEGE z_SPIRO-UKB_FVC z_CARDIOGRAMPLUSC4D_CAD,12,0.1116617892858211,0.0184374350454545,260833.4904368515,0.1228199087118925,0.7156526604685894
1449,z_MAGIC_FAST-INSULIN z_GEFOS_BMD-FOREARM z_MAGIC_HBA1C z_SSGAC_COLLEGE z_UKIBD_UC z_ICBP_DBP z_BCAC_BREAST-CANCER-ERPOS,7,0.0975909599201299,0.0115809523809523,112875.4044829799,0.127517140805905,0.6207617707284622
797,z_ICBP_SBP z_SPIRO-UKB_FVC z_CARDIOGRAMPLUSC4D_CAD z_SPIRO-UKB_FEV1-FVC z_ICBP_DBP z_MAGIC_FAST-INSULIN z_SPIRO-UKB_PEF z_ISGEC_SLEEP-MEAN,8,0.0873394827589807,0.0265678571428571,261620.20120249045,0.1825574111558176,0.6951777274361935
361,z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FEV1 z_CARDIOGRAMPLUSC4D_CAD z_SSGAC_COLLEGE z_UKBIOBANK_ALAT z_SPIRO-UKB_PEF z_PGC_BIP z_ISGEC_SLEEP-SD z_ICBP_SBP z_GIANT_HIP z_MAGIC_FAST-INSULIN,12,0.1062118853462607,0.0155192532272727,228870.3204629508,0.1380511473881252,0.7277526983953627
1130,z_UKIBD_CD z_GLG_LDL z_GLG_TC z_VGHRV_SDNN z_IGAP_AZ z_DIAGRAM_T2D z_GEFOS_BMD-FOREARM z_NEIGHBORHOOD_POAG z_MAGIC_HOMA-B z_TAGC_ASTHMA z_IMSGC-WTCC2_MULTSCLE z_WILLER_ATRIALFIBRI,12,0.0860585419678969,0.011310606060606,61057.65184001551,0.1186015332539134,0.5058176743180883
503,z_MAGIC_FAST-INSULIN z_CARDIOGRAMPLUSC4D_CAD z_IMSGC-WTCC2_MULTSCLE z_NEIGHBORHOOD_POAG z_UKBIOBANK_POAG z_ISGEC_SLEEP-SD,6,0.1394521689621997,0.00966,65620.7220878685,0.0974778826416972,0.7227631217072056
1764,z_GEFOS_BMD-FOREARM z_UKBIOBANK_POAG z_MAGIC_2HGLU-ADJBMI z_GLG_LDL z_VGHRV_SDNN z_GLG_HDL z_DIAGRAM_T2D z_UKIBD_UC,8,0.1027078239874987,0.0109357142857142,48674.61672798701,0.1247137059011896,0.515936136670362
35,z_SPIRO-UKB_FEV1 z_VAN-HEEL_CELIAC z_MAGIC_FAST-INSULIN z_ISGEC_SLEEP-SD z_ISGEC_SLEEP-MEAN,5,0.1177238055335039,0.01227,125786.39500098149,0.1131733816379913,0.8092728725720985
340,z_NEIGHBORHOOD_POAG z_C4D_CHD z_CARDIOGRAMPLUSC4D_CAD z_UKBIOBANK_POAG z_MAGIC_HOMA-B z_SSGAC_COLLEGE z_TAGC_ASTHMA z_BCAC_BREAST-CANCER-ERPOS z_IMSGC-WTCC2_MULTSCLE,9,0.1426152251211962,0.0100055555555555,84594.39759181679,0.0802879603112493,0.6213230511402251
1447,z_GLG_LDL z_UKBIOBANK_ALAT,2,0.1705977739626475,0.0185,268583.5,0.1205676248688687,0.5029039893692331
657,z_IMSGC-WTCC2_MULTSCLE z_TAGC_ASTHMA z_NEIGHBORHOOD_POAG z_GEFOS_BMD-FOREARM z_UKIBD_UC z_WILLER_ATRIALFIBRI z_DIAGRAM_T2D z_GLG_LDL z_MAGIC_HOMA-B z_GLG_TG,10,0.1048840988498445,0.0132155555555555,66120.99832739888,0.1093648152124252,0.478005399791865
419,z_ICBP_DBP z_VGHRV_SDNN,2,0.1819092209048439,0.0378,163568.0,0.2273786384558559,0.5732608303425372
183,z_MAGIC_FAST-INSULIN z_ISGEC_SLEEP-SD z_GLG_LDL z_TAGC_ASTHMA z_SPIRO-UKB_PEF z_MAGIC_HBA1C z_ISGEC_DIURNAL-IN z_UKIBD_UC z_GLG_TG z_SPIRO-UKB_FEV1,10,0.0877207883109859,0.0116577777777777,136195.47305151616,0.1051494156247887,0.6101287515046896
1214,z_IGAP_AZ z_C4D_CHD z_NEIGHBORHOOD_POAG z_DIAGRAM_T2D z_MAGIC_HOMA-B z_CARDIOGRAMPLUSC4D_CAD z_BCAC_BREAST-CANCER-ERPOS,7,0.1626078670871484,0.0113619047619047,81130.75234560513,0.0489715944931344,0.6002027327043091
1612,z_SPIRO-UKB_FEV1-FVC z_ISGEC_DIURNAL-IN,2,0.0679982307201221,0.0095,242429.5,0.1362074114637421,0.7414340407318739
1568,z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FEV1 z_UKBIOBANK_ALAT z_ICBP_SBP z_SPIRO-UKB_FVC z_MAGIC_FAST-INSULIN z_GIANT_HIP z_BCAC_BREAST-CANCER-ERPOS z_ISGEC_DIURNAL-IN z_SSGAC_COLLEGE,10,0.1028685179703238,0.0188549047333333,256724.32756222948,0.136261094752845,0.7300606948765767
368,z_UKBIOBANK_POAG z_IGAP_AZ z_MAGIC_2HGLU-ADJBMI z_MAGIC_HOMA-B z_TAGC_ASTHMA z_UKIBD_CD,6,0.0740921120764503,0.0057466666666666,45166.37942951298,0.1493378518188367,0.5652871307727031
903,z_UKIBD_CD z_PGC_BIP z_SPIRO-UKB_PEF z_UKBIOBANK_ALAT z_WILLER_ATRIALFIBRI z_ICBP_DBP z_MAGIC_2HGLU-ADJBMI z_ICBP_SBP,8,0.0482832530338222,0.0235,216177.54888277937,0.2567920469382481,0.6347500098421232
100,z_SPIRO-UKB_PEF z_MAGIC_2HGLU-ADJBMI z_C4D_CHD,3,0.0669304760610667,0.0059333333333333,148604.598473416,0.080324507855312,0.6573115618152242
205,z_GIANT_HIP z_C4D_CHD,2,0.1921093489746714,0.0181,87966.897710124,0.0750925662768479,0.6699008631710204
1086,z_WILLER_ATRIALFIBRI z_MAGIC_HBA1C z_GLG_LDL z_IGAP_AZ z_UKIBD_UC z_TAGC_ASTHMA z_IMSGC-WTCC2_MULTSCLE z_MAGIC_HOMA-B z_VGHRV_SDNN z_GLG_TC,10,0.0830076252222064,0.0105597213111111,71914.94577439466,0.1052430692481412,0.4861163244380796
1629,z_GLG_LDL z_PGC_BIP,2,0.0453295390878284,0.0103,58221.98015659554,0.2338321064207826,0.6264720662991389
1002,z_ICBP_DBP z_UKBIOBANK_ALAT z_UKIBD_UC z_SPIRO-UKB_FEV1-FVC z_UKIBD_CD z_ISGEC_SLEEP-MEAN z_GLG_TG,7,0.0546819183122963,0.0187666666666666,198372.06002999467,0.2400197777380834,0.5730271233528134
668,z_PGC_BIP z_SPIRO-UKB_FVC z_SSGAC_COLLEGE,3,0.1770495273387668,0.0296666666666666,181068.32010439705,0.1986560427879616,0.8072134748083363
922,z_ISGEC_DIURNAL-IN z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_PEF z_SPIRO-UKB_FVC z_MAGIC_FAST-INSULIN z_PGC_BIP z_UKBIOBANK_ALAT z_ISGEC_SLEEP-MEAN,8,0.0878611428633019,0.0142642857142857,212261.9044919357,0.1296505195461909,0.7781142806266398
841,z_SPIRO-UKB_FVC z_SPIRO-UKB_PEF z_GLG_TC z_VAN-HEEL_CELIAC z_SPIRO-UKB_FEV1-FVC,5,0.0555488447692277,0.0206799999999999,261702.79500098148,0.160752089229191,0.5951257832267514
86,z_UKBIOBANK_POAG z_UKBIOBANK_ALAT z_SPIRO-UKB_FEV1-FVC z_VAN-HEEL_CELIAC z_GLG_TC z_BCAC_BREAST-CANCER-ERPOS z_ISGEC_SLEEP-MEAN z_ISGEC_SLEEP-SD z_DIAGRAM_T2D z_PGC_BIP,10,0.0663606048617142,0.0082644444444444,146136.35890057252,0.144588021477301,0.6763132135948521
763,z_SPIRO-UKB_FEV1 z_WILLER_ATRIALFIBRI z_GIANT_HIP z_ICBP_SBP z_GLG_TG z_SPIRO-UKB_FEV1-FVC,6,0.0687196467130402,0.0228466666666666,261583.7610496076,0.1732928960220614,0.5847455790979587
736,z_BCAC_BREAST-CANCER-ERPOS z_UKBIOBANK_POAG z_NEIGHBORHOOD_POAG z_TAGC_ASTHMA z_C4D_CHD z_MAGIC_HOMA-B z_IGAP_AZ z_MAGIC_HBA1C z_IMSGC-WTCC2_MULTSCLE z_DIAGRAM_T2D,10,0.1621229006633941,0.0103086102,60495.5169629404,0.0776555657969178,0.5535862974527916
1954,z_GLG_TG z_CARDIOGRAMPLUSC4D_CAD z_BCAC_BREAST-CANCER-ERPOS z_MAGIC_2HGLU-ADJBMI z_ISGEC_SLEEP-MEAN z_MAGIC_HBA1C z_MAGIC_HOMA-B z_ISGEC_SLEEP-SD z_MAGIC_FAST-INSULIN z_NEIGHBORHOOD_POAG z_UKIBD_CD,11,0.1074187132011613,0.0100345454545454,78086.28495703725,0.0956366693159962,0.6513345138353268
1948,z_GEFOS_BMD-FOREARM z_IMSGC-WTCC2_MULTSCLE z_UKIBD_UC,3,0.3939309463723131,0.0547666666666666,23014.06219211329,0.1771876763137216,0.5000463372797482
638,z_SPIRO-UKB_PEF z_BCAC_BREAST-CANCER-ERPOS z_MAGIC_HOMA-B z_IMSGC-WTCC2_MULTSCLE z_SSGAC_COLLEGE z_SPIRO-UKB_FEV1-FVC z_UKIBD_CD z_GLG_TG z_GEFOS_BMD-FOREARM z_UKBIOBANK_ALAT,10,0.1121971774233451,0.0142822222222222,180138.97708914685,0.1335106922945046,0.5648224299421633
697,z_GIANT_HIP z_CARDIOGRAMPLUSC4D_CAD z_SPIRO-UKB_FVC z_ICBP_SBP z_SSGAC_COLLEGE z_ISGEC_SLEEP-MEAN z_UKBIOBANK_ALAT z_ISGEC_DIURNAL-IN z_BCAC_BREAST-CANCER-ERPOS z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_FEV1 z_ISGEC_SLEEP-SD,12,0.0956672338014924,0.0155041017121212,237826.65710351817,0.1277762346935627,0.747175457955343
1882,z_SPIRO-UKB_FEV1 z_UKIBD_CD z_GLG_TG z_GEFOS_BMD-FOREARM z_UKIBD_UC z_SPIRO-UKB_FEV1-FVC z_GIANT_HIP z_WILLER_ATRIALFIBRI,8,0.08275119055248,0.0255999999999999,168598.24831345104,0.1827557547817658,0.5397071264222475
1518,z_UKIBD_CD z_VGHRV_SDNN z_GLG_TG z_GEFOS_BMD-FOREARM,4,0.0905571280731117,0.0182666666666666,41714.46611284955,0.1690639491037382,0.467698950646491
1106,z_UKBIOBANK_POAG z_ISGEC_SLEEP-SD z_IGAP_AZ z_MAGIC_HBA1C z_TAGC_ASTHMA z_C4D_CHD,6,0.1024978474031893,0.0058666666666666,56143.36792432128,0.067789736501491,0.6056649612409757
1229,z_CARDIOGRAMPLUSC4D_CAD z_MAGIC_HBA1C z_UKBIOBANK_POAG z_C4D_CHD z_IGAP_AZ z_BCAC_BREAST-CANCER-ERPOS z_DIAGRAM_T2D z_TAGC_ASTHMA,8,0.1634373290803187,0.0111785714285714,85397.59544971985,0.0673893449574684,0.5799729817275958
1708,z_UKIBD_CD z_MAGIC_HOMA-B z_GLG_TC z_IMSGC-WTCC2_MULTSCLE z_NEIGHBORHOOD_POAG z_DIAGRAM_T2D z_VGHRV_SDNN z_UKIBD_UC z_GLG_LDL z_VAN-HEEL_CELIAC z_C4D_CHD,11,0.1261221842377835,0.0200236363636363,41973.62519057268,0.1539435956798403,0.5193811119015223
470,z_ICBP_SBP z_DIAGRAM_T2D z_GLG_HDL z_GLG_TG z_ICBP_DBP z_IGAP_AZ z_PGC_BIP z_MAGIC_HOMA-B z_SPIRO-UKB_FEV1-FVC z_ISGEC_SLEEP-SD z_WILLER_ATRIALFIBRI,11,0.0932666770274273,0.0183799999999999,150644.7934121648,0.164998835004596,0.5778542362236005
1153,z_SPIRO-UKB_FEV1-FVC z_SPIRO-UKB_PEF z_ICBP_DBP z_ICBP_SBP z_SPIRO-UKB_FEV1 z_UKIBD_CD z_UKBIOBANK_ALAT z_MAGIC_2HGLU-ADJBMI z_SPIRO-UKB_FVC,9,0.0481348822782422,0.0303777777777777,298329.09605015535,0.2346116646253,0.6258846959094124
1597,z_GEFOS_BMD-FOREARM z_SSGAC_COLLEGE z_GLG_LDL z_ISGEC_DIURNAL-IN z_ICBP_SBP z_ISGEC_SLEEP-MEAN z_GLG_TG z_ISGEC_SLEEP-SD z_VAN-HEEL_CELIAC z_MAGIC_FAST-INSULIN z_MAGIC_2HGLU-ADJBMI,11,0.1147501593653129,0.0155636363636363,87185.90681862795,0.1188710492794739,0.7041953884707207
1009,z_UKBIOBANK_ALAT z_ICBP_DBP z_GLG_TC z_GLG_HDL z_ISGEC_SLEEP-SD z_SPIRO-UKB_FVC z_GLG_LDL z_GIANT_HIP z_IMSGC-WTCC2_MULTSCLE z_IGAP_AZ,10,0.1009167352542022,0.0131533333333333,173323.6160931139,0.1444744979103856,0.6044475028778752
1732,z_ICBP_DBP z_GEFOS_BMD-FOREARM,2,0.1084535271625758,0.024,153583.5,0.2252484404358153,0.5161628672992529
116,z_MAGIC_HOMA-B z_IMSGC-WTCC2_MULTSCLE z_C4D_CHD z_GEFOS_BMD-FOREARM z_GLG_TC z_NEIGHBORHOOD_POAG,6,0.1318655607001345,0.0119533333333333,36470.30184530277,0.0852337972089061,0.5102007861999914
60,z_BCAC_BREAST-CANCER-ERPOS z_ISGEC_SLEEP-SD z_NEIGHBORHOOD_POAG z_UKBIOBANK_POAG z_MAGIC_FAST-INSULIN z_TAGC_ASTHMA,6,0.1085654124442258,0.0069066666666666,83506.92374473398,0.0678803617400797,0.707973853804313
data/range_feature_gain_prediction.tsv 0 → 100644
+ 7
− 0
View file @ fe5f676a
minimum_value maximum_value
k 2.0 12.0
log10_avg_distance_cor -4.675617219570908 0.20864138105896807
log10_mean_gencov -4.4093921991254446 -0.46117501106209624
avg_Neff 6730.5 697828.0
avg_h2_mixer 0.014033707225812 0.4361454950334251
avg_perc_h2_diff_region 0.0906544694784672 0.9831222899777692
jass/__main__.py
+ 26
− 0
View file @ fe5f676a
......@@ -21,6 +21,8 @@ from jass.models.plots import (
create_local_plot,
create_qq_plot,
)
from jass.models.gain import compute_gain
from pandas import read_hdf
def absolute_path_of_the_file(fileName, output_file=False):
......@@ -279,6 +281,14 @@ def w_gene_annotation(args):
gene_data_path, initTable_path, df_gene_csv_path, df_exon_csv_path
)
def w_compute_gain(args):
combi_path = absolute_path_of_the_file(args.combination_path)
combi_path_with_gain = absolute_path_of_the_file(args.gain_path, True)
compute_gain(
combi_path, combi_path_with_gain
)
def get_parser():
parser = argparse.ArgumentParser(prog="jass")
......@@ -619,6 +629,22 @@ def get_parser():
help="Existing key are 'SumStatTab' : The results of the joint analysis by SNPs - 'PhenoList' : the meta data of analysed GWAS - 'COV' : The H0 covariance used to perform joint analysis - 'GENCOV' (If present in the initTable): The genetic covariance as computed by the LDscore. Uniquely for the worktable: 'Regions' : Results of the joint analysis summarised by LD regions (Notably Lead SNPs by regions) - 'summaryTable': a double entry table summarizing the number of significant regions by test (univariate vs joint test)",
)
parser_create_mp.set_defaults(func=w_extract_tsv)
# ------- compute predicted gain -------#
parser_create_mp = subparsers.add_parser(
"predict-gain", help="predict gain based on the genetic architecture of the set of multi-trait"
)
parser_create_mp.add_argument(
"--combination-path",
required=True,
help="path to the worktable file containing the data",
)
parser_create_mp.add_argument(
"--gain-path", required=True, help="path to save predicted gain"
)
parser_create_mp.set_defaults(func=w_compute_gain)
return parser
......
jass/models/gain.py 0 → 100644
+ 28
− 0
View file @ fe5f676a
import pandas as pd
import numpy as np
X_range = pd.read_csv("./data/range_feature_gain_prediction.tsv", sep="\t", index_col=0)
model_coefficients = pd.read_csv("./data/coef_mean_model.tsv", sep="\t", index_col=0)
# Scale according to observed
def scale_feature(X, feature_name):
X_std = (X - X_range.loc[feature_name, "minimum_value"]) / ( X_range.loc[feature_name, "maximum_value"] - X_range.loc[feature_name, "minimum_value"])
return X_std
def preprocess_feature(df_combinations):
# transformation of features
df_combinations['log10_mean_gencov'] = np.log10(df_combinations.mean_gencov)
df_combinations['log10_avg_distance_cor'] = np.log10(df_combinations.avg_distance_cor)
for f in ["k", "log10_avg_distance_cor", "log10_mean_gencov", "avg_Neff", "avg_h2_mixer", "avg_perc_h2_diff_region"]:
df_combinations[f] = scale_feature(df_combinations[f], f)
return df_combinations
def compute_gain(path_combi, path_output):
df_combinations = pd.read_csv(path_combi)
preprocess_feature(df_combinations)
df_combinations["gain"] = df_combinations[["k", "log10_avg_distance_cor", "log10_mean_gencov", "avg_Neff", "avg_h2_mixer", "avg_perc_h2_diff_region"]].dot(model_coefficients["0"].values)
df_combinations.sort_values(by="gain", ascending=False).to_csv(path_output, sep="\t")
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