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Commit 9df7ebfb authored by Hanna  JULIENNE's avatar Hanna JULIENNE
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Update README.md

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# Preprocessing package for cleaning and formating data for JASS
This helper package convert heterogeneous GWAS summary statistic format to
the IMPG input format.
## Installation
*Requirement* :
## Usage
Once installed the preprocessing can be launch in the following manner:
## reference panel format:
The user is expected to provide a reference panel with the following
column naming and column types:
| chr | pos | snp_id | ref | alt | MAF |
|-----|-----|--------|-----|-----|-----|
|1 |13116 |rs62635286 | T| G| 0.0970447|
|1 |13118 |rs200579949 |A |G |0.0970447|
|1 |14604 |rs541940975 |A |G |0.147564|
|1 |14930 |rs75454623 |A |G |0.482228|
***
## Output format
['rsID', 'pos', 'A0', "A1", "Z" ]
The package is documented at http://statistical-genetics.pages.pasteur.fr/JASS_Pre-processing/
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