Added initial (mixed) detection of sirtuins and sirims (not shown in paper)
Showing
- dev/initial_mixed_detection/1_detection/data/all_sirtuin_orthologs_clean_98-98_rep_seq.fasta 1 addition, 0 deletions...tion/data/all_sirtuin_orthologs_clean_98-98_rep_seq.fasta
- dev/initial_mixed_detection/1_detection/data/defense_finder_sirim.faa 52383 additions, 0 deletions...mixed_detection/1_detection/data/defense_finder_sirim.faa
- dev/initial_mixed_detection/1_detection/data/defense_finder_sirim.ids 5448 additions, 0 deletions...mixed_detection/1_detection/data/defense_finder_sirim.ids
- dev/initial_mixed_detection/1_detection/data/defense_finder_sirim_80-80_all_seqs.fasta 12834 additions, 0 deletions..._detection/data/defense_finder_sirim_80-80_all_seqs.fasta
- dev/initial_mixed_detection/1_detection/data/defense_finder_sirim_80-80_cluster.tsv 5448 additions, 0 deletions...n/1_detection/data/defense_finder_sirim_80-80_cluster.tsv
- dev/initial_mixed_detection/1_detection/data/defense_finder_sirim_80-80_rep_seq.fasta 3876 additions, 0 deletions...1_detection/data/defense_finder_sirim_80-80_rep_seq.fasta
- dev/initial_mixed_detection/1_detection/data/sirtuins_sirim_rep_seq.afa 0 additions, 0 deletions...xed_detection/1_detection/data/sirtuins_sirim_rep_seq.afa
- dev/initial_mixed_detection/1_detection/data/sirtuins_sirim_rep_seq.faa 8604 additions, 0 deletions...xed_detection/1_detection/data/sirtuins_sirim_rep_seq.faa
- dev/initial_mixed_detection/1_detection/data/sirtuins_sirim_rep_seq_5056-11251.afa 339858 additions, 0 deletions...on/1_detection/data/sirtuins_sirim_rep_seq_5056-11251.afa
- dev/initial_mixed_detection/1_detection/data/sirtuins_sirim_rep_seq_5056-11251.hmm 577 additions, 0 deletions...on/1_detection/data/sirtuins_sirim_rep_seq_5056-11251.hmm
- dev/initial_mixed_detection/1_detection/results/mmseqs/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits_30-80_all_seqs.fasta 118438 additions, 0 deletions...s-gt-20_qcov-gt-60_len-100-2500_hits_30-80_all_seqs.fasta
- dev/initial_mixed_detection/1_detection/results/mmseqs/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits_30-80_cluster.fasta 57911 additions, 0 deletions...bs-gt-20_qcov-gt-60_len-100-2500_hits_30-80_cluster.fasta
- dev/initial_mixed_detection/1_detection/results/mmseqs/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits_30-80_rep_seq.fasta 5232 additions, 0 deletions...bs-gt-20_qcov-gt-60_len-100-2500_hits_30-80_rep_seq.fasta
- dev/initial_mixed_detection/1_detection/results/reports/sirtuins-sirim-mixed_kingdom=all.report 29 additions, 0 deletions...n/results/reports/sirtuins-sirim-mixed_kingdom=all.report
- dev/initial_mixed_detection/1_detection/results/reports/sirtuins-sirim-mixed_kingdom=all_euk-taxon.counts 6 additions, 0 deletions...reports/sirtuins-sirim-mixed_kingdom=all_euk-taxon.counts
- dev/initial_mixed_detection/1_detection/results/reports/sirtuins-sirim-mixed_kingdom=all_kingdom.counts 4 additions, 0 deletions...s/reports/sirtuins-sirim-mixed_kingdom=all_kingdom.counts
- dev/initial_mixed_detection/1_detection/results/reports/sirtuins-sirim-mixed_kingdom=all_report.html 61 additions, 0 deletions...ults/reports/sirtuins-sirim-mixed_kingdom=all_report.html
- dev/initial_mixed_detection/1_detection/results/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_domtblout.tsv 57951 additions, 0 deletions...om=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_domtblout.tsv
- dev/initial_mixed_detection/1_detection/results/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits.faa 466281 additions, 0 deletions...kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits.faa
- dev/initial_mixed_detection/1_detection/results/sirtuins-sirim-mixed_kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits.ids 57928 additions, 0 deletions...kingdom=all_1.0_bs-gt-20_qcov-gt-60_len-100-2500_hits.ids
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