Added joint phylogeny between SIR2 and SIRim subfamilies (Figure 1)

dev/phylo_sir2_sirim/.TO_ANALYZE

...55_qcov-gt-60_len-200-2300_hit_region_90-90_rep_seq.fasta

...55_qcov-gt-60_len-200-2300_hit_region_50-80_rep_seq.fasta

...55_qcov-gt-60_len-200-2300_hit_region_90-90_rep_seq.fasta

...20_qcov-gt-60_len-100-2500_hit_region_50-80_rep_seq.fasta

...80_qcov-gt-60_len-100-2500_hit_region_50-80_rep_seq.fasta

dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.afa

dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.faa

..._sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.afa

..._sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.faa

..._sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.ids

...a/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99.clipkit

...ns_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.clipkit

...sults/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99.log

...uins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.bionj

...ns_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.contree

...ins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.iqtree

...rtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.log

...sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.splits.nex

...s_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.treefile