Added joint phylogeny between SIR2 and SIRim subfamilies (Figure 1) (51f17296) · Commits · MDM Lab / SIRal

Commit 51f17296 authored 8 months ago by

Hugo Vaysset

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Added joint phylogeny between SIR2 and SIRim subfamilies (Figure 1)

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dev/phylo_sir2_sirim/.TO_ANALYZE 0 additions, 0 deletions

dev/phylo_sir2_sirim/.TO_ANALYZE
dev/phylo_sir2_sirim/data/fam118b_round-8-adl_kingdom=arch_1e-05_bs-gt-55_qcov-gt-60_len-200-2300_hit_region_90-90_rep_seq.fasta 1 addition, 0 deletions

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dev/phylo_sir2_sirim/data/fam118b_round-8-adl_kingdom=bact_1e-05_bs-gt-55_qcov-gt-60_len-200-2300_hit_region_50-80_rep_seq.fasta 1 addition, 0 deletions

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dev/phylo_sir2_sirim/data/fam118b_round-8-adl_kingdom=euk_1e-05_bs-gt-55_qcov-gt-60_len-200-2300_hit_region_90-90_rep_seq.fasta 1 addition, 0 deletions

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dev/phylo_sir2_sirim/data/pf14253_kingdom=all_1e-05_bs-gt-20_qcov-gt-60_len-100-2500_hit_region_50-80_rep_seq.fasta 1 addition, 0 deletions

...20_qcov-gt-60_len-100-2500_hit_region_50-80_rep_seq.fasta
dev/phylo_sir2_sirim/data/sirtuins_round-5_kingdom=all_1e-05_bs-gt-80_qcov-gt-60_len-100-2500_hit_region_50-80_rep_seq.fasta 1 addition, 0 deletions

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dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.afa 367875 additions, 0 deletions

dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.afa
dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.faa 5583 additions, 0 deletions

dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all.faa
dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.afa 337776 additions, 0 deletions

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dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.faa 14235 additions, 0 deletions

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dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured.ids 2723 additions, 0 deletions

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dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99.clipkit 43584 additions, 0 deletions

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dev/phylo_sir2_sirim/data/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.clipkit 43568 additions, 0 deletions

...ns_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.clipkit
dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99.log 2449 additions, 0 deletions

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dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.bionj 1 addition, 0 deletions

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dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.contree 1 addition, 0 deletions

...ns_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.contree
dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.iqtree 11021 additions, 0 deletions

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dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.log 4077 additions, 0 deletions

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dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.splits.nex 19090 additions, 0 deletions

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dev/phylo_sir2_sirim/results/sirtuins_sir2-like_kingdom=all_cured_gappy=0.99_no-dupl.treefile 1 addition, 0 deletions

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