add coli example

backend/analysis/api.py

@@ -97,6 +97,37 @@ def add(
     return analysis
 
 
+@router.post("add-example", response={200: AnalysisOutSchema, 503: Error})
+def add_example(
+    request,
+):
+    request.session.set_expiry(session_expiry)
+    if request.session.session_key:
+        session_key = request.session.session_key
+    else:
+        request.session.create()
+        request.session.set_expiry(session_expiry)
+        session_key = request.session.session_key
+    session = Session.objects.get(session_key=session_key)
+
+    aw = AnalysisWorkflow.objects.get(galaxy_id=settings.GALAXY_WORKFLOW_ID)
+
+    # check if Galaxy online
+
+    is_galaxy_online = aw.analysis_owner.galaxy_instance.is_online()
+    if not is_galaxy_online:
+        return 503, {"message": "The Galaxy instance is offline"}
+    print(settings.BASE_DIR)
+
+    input_files = [
+        f"{settings.BASE_DIR}/analysis/data/GCF_000005845.faa",
+    ]
+    params = {}
+    analysis = aw.invoke(session, input_files, params, "GCF_000005845.faa")
+
+    return analysis
+
+
 @router.get("/", response={200: list[AnalysisOutSchema], 503: Error})
 def list(request):
     session_key = request.session.session_key

frontend/components/SubmitAnalysis.vue

@@ -36,6 +36,24 @@ if (data.value !== null && !data.value.is_online) {
   throw createError("The galaxy instance is offline")
 }
 const loading = ref(false)
+async function addExample() {
+  loading.value = true
+
+
+  try {
+    await $fetch('/dfapi/analysis/add-example', {
+      method: 'POST',
+      headers: { "X-CSRFToken": csrfToken.value }
+    })
+    await navigateTo("/analyses/")
+  } catch (error) {
+    throw createError("Cannot upload the pasted sequence")
+  } finally {
+    loading.value = false
+
+  }
+
+}
 
 async function submit(event) {
   loading.value = true
@@ -70,6 +88,7 @@ async function submit(event) {
           <v-tabs v-model="tab" align-tabs="start">
             <v-tab value="local" :rounded="false">Local fasta files</v-tab>
             <v-tab value="paste" :rounded="false">Paste fasta sequences</v-tab>
+            <v-tab value="example" :rounded="false">Example</v-tab>
           </v-tabs>
 
           <v-card-text>
@@ -84,6 +103,22 @@ async function submit(event) {
                   <v-btn type="submit" :loading="loading">Submit</v-btn>
                 </v-form>
               </v-window-item>
+              <v-window-item value="example">
+                <v-card flat color="transparent">
+                  <v-form>
+                    <v-card-text>
+                      You can try an example with Escherichia coli str. K-12 substr. MG1655 proteins downloaded from <a
+                        target="_blank"
+                        href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2">GCF_000005845.2</a>
+                    </v-card-text>
+                    <v-card-actions>
+                      <v-btn variant="elevated" density="default" size="default" :slim="false" rounded="xl"
+                        color="primary" :loading="loading" @click="addExample()">Submit</v-btn>
+                    </v-card-actions>
+                  </v-form>
+                </v-card>
+
+              </v-window-item>
 
             </v-window>
           </v-card-text>