Skip to content
Snippets Groups Projects
Commit 73dd6d12 authored by FlorianTesson's avatar FlorianTesson
Browse files

Merge branch 'merge_Wikis' of gitlab.pasteur.fr:mdm-lab/wiki into merge_Wikis

It is important
parents b620134d a1df9915
No related branches found
No related tags found
1 merge request!4Merge wikis
Pipeline #110887 failed
This commit is part of merge request !4. Comments created here will be created in the context of that merge request.
......@@ -8,7 +8,7 @@ The dGTPase system is composed of one protein: Sp_dGTPase.
Here is an example found in the RefSeq database:
<img src="./data/dGTPase.svg">
![dGTPase](/dGTPase.svg)
dGTPase system in the genome of *Acinetobacter pittii* (GCF\_002012285.1) is composed of 1 protein: Sp\_dGTPase (WP\_213033921.1).
......@@ -18,7 +18,7 @@ The dGTPase system is present in a total of 353 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes (6.7 %).
<img src="./data/Distribution_dGTPase.svg" width=800px>
![Distribution_dGTPase](/Distribution_dGTPase.svg)
*Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
<?xml version="1.0" encoding="utf-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<svg xmlns:xlink="http://www.w3.org/1999/xlink" width="717.403125pt" height="351.78375pt" viewBox="0 0 717.403125 351.78375" xmlns="http://www.w3.org/2000/svg" version="1.1">
<metadata>
<rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cc="http://creativecommons.org/ns#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<cc:Work>
<dc:type rdf:resource="http://purl.org/dc/dcmitype/StillImage"/>
<dc:date>2023-02-21T16:19:04.589087</dc:date>
<dc:format>image/svg+xml</dc:format>
<dc:creator>
<cc:Agent>
<dc:title>Matplotlib v3.6.3, https://matplotlib.org/</dc:title>
</cc:Agent>
</dc:creator>
</cc:Work>
</rdf:RDF>
</metadata>
<defs>
<style type="text/css">*{stroke-linejoin: round; stroke-linecap: butt}</style>
</defs>
<g id="figure_1">
<g id="patch_1">
<path d="M 0 351.78375
L 717.403125 351.78375
L 717.403125 0
L 0 0
z
" style="fill: #ffffff"/>
</g>
<g id="axes_1">
<g id="patch_2">
<path d="M 40.603125 224.64
L 710.203125 224.64
L 710.203125 7.2
L 40.603125 7.2
z
" style="fill: #ffffff"/>
</g>
<g id="patch_3">
<path d="M 71.039489 224.64
L 106.328026 224.64
L 106.328026 17.554286
L 71.039489 17.554286
z
" clip-path="url(#pc1c4fa5802)" style="fill: #822faf"/>
</g>
<g id="patch_4">
<path d="M 115.150161 224.64
L 150.438698 224.64
L 150.438698 224.64
L 115.150161 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #c05299"/>
</g>
<g id="patch_5">
<path d="M 159.260833 224.64
L 194.54937 224.64
L 194.54937 224.64
L 159.260833 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #f94144"/>
</g>
<g id="patch_6">
<path d="M 203.371504 224.64
L 238.660042 224.64
L 238.660042 188.511266
L 203.371504 188.511266
z
" clip-path="url(#pc1c4fa5802)" style="fill: #ff4800"/>
</g>
<g id="patch_7">
<path d="M 247.482176 224.64
L 282.770714 224.64
L 282.770714 224.64
L 247.482176 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #f29e4c"/>
</g>
<g id="patch_8">
<path d="M 291.592848 224.64
L 326.881386 224.64
L 326.881386 152.061388
L 291.592848 152.061388
z
" clip-path="url(#pc1c4fa5802)" style="fill: #f1c453"/>
</g>
<g id="patch_9">
<path d="M 335.70352 224.64
L 370.992058 224.64
L 370.992058 224.64
L 335.70352 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #efea5a"/>
</g>
<g id="patch_10">
<path d="M 379.814192 224.64
L 415.10273 224.64
L 415.10273 220.62964
L 379.814192 220.62964
z
" clip-path="url(#pc1c4fa5802)" style="fill: #b9e769"/>
</g>
<g id="patch_11">
<path d="M 423.924864 224.64
L 459.213402 224.64
L 459.213402 224.64
L 423.924864 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #83e377"/>
</g>
<g id="patch_12">
<path d="M 468.035536 224.64
L 503.324074 224.64
L 503.324074 221.862757
L 468.035536 221.862757
z
" clip-path="url(#pc1c4fa5802)" style="fill: #16db93"/>
</g>
<g id="patch_13">
<path d="M 512.146208 224.64
L 547.434746 224.64
L 547.434746 223.077003
L 512.146208 223.077003
z
" clip-path="url(#pc1c4fa5802)" style="fill: #0db39e"/>
</g>
<g id="patch_14">
<path d="M 556.25688 224.64
L 591.545417 224.64
L 591.545417 224.64
L 556.25688 224.64
z
" clip-path="url(#pc1c4fa5802)" style="fill: #048ba8"/>
</g>
<g id="patch_15">
<path d="M 600.367552 224.64
L 635.656089 224.64
L 635.656089 222.575675
L 600.367552 222.575675
z
" clip-path="url(#pc1c4fa5802)" style="fill: #2c699a"/>
</g>
<g id="patch_16">
<path d="M 644.478224 224.64
L 679.766761 224.64
L 679.766761 129.872657
L 644.478224 129.872657
z
" clip-path="url(#pc1c4fa5802)" style="fill: #54478c"/>
</g>
<g id="matplotlib.axis_1">
<g id="xtick_1">
<g id="line2d_1">
<defs>
<path id="m8997bd18ef" d="M 0 0
L 0 3.5
" style="stroke: #000000; stroke-width: 0.8"/>
</defs>
<g>
<use xlink:href="#m8997bd18ef" x="88.683757" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_1">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(91.443132 314.222812) rotate(-90)"> Planctomycetes</text>
</g>
</g>
<g id="xtick_2">
<g id="line2d_2">
<g>
<use xlink:href="#m8997bd18ef" x="132.794429" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_2">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(135.553804 308.475937) rotate(-90)"> Crenarchaeota</text>
</g>
</g>
<g id="xtick_3">
<g id="line2d_3">
<g>
<use xlink:href="#m8997bd18ef" x="176.905101" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_3">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(179.664476 298.750937) rotate(-90)"> Fusobacteria</text>
</g>
</g>
<g id="xtick_4">
<g id="line2d_4">
<g>
<use xlink:href="#m8997bd18ef" x="221.015773" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_4">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(223.775148 316.315) rotate(-90)"> Verrucomicrobia</text>
</g>
</g>
<g id="xtick_5">
<g id="line2d_5">
<g>
<use xlink:href="#m8997bd18ef" x="265.126445" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_5">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(267.88582 294.111875) rotate(-90)"> Chlamydiae</text>
</g>
</g>
<g id="xtick_6">
<g id="line2d_6">
<g>
<use xlink:href="#m8997bd18ef" x="309.237117" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_6">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(311.996492 344.58375) rotate(-90)"> Deinococcus-Thermus</text>
</g>
</g>
<g id="xtick_7">
<g id="line2d_7">
<g>
<use xlink:href="#m8997bd18ef" x="353.347789" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_7">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(356.107164 291.8775) rotate(-90)"> Tenericutes</text>
</g>
</g>
<g id="xtick_8">
<g id="line2d_8">
<g>
<use xlink:href="#m8997bd18ef" x="397.458461" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_8">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(400.217836 307.369687) rotate(-90)"> Cyanobacteria</text>
</g>
</g>
<g id="xtick_9">
<g id="line2d_9">
<g>
<use xlink:href="#m8997bd18ef" x="441.569133" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_9">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(444.328508 307.8025) rotate(-90)"> Euryarchaeota</text>
</g>
</g>
<g id="xtick_10">
<g id="line2d_10">
<g>
<use xlink:href="#m8997bd18ef" x="485.679805" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_10">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(488.43918 299.697812) rotate(-90)"> Spirochaetes</text>
</g>
</g>
<g id="xtick_11">
<g id="line2d_11">
<g>
<use xlink:href="#m8997bd18ef" x="529.790477" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_11">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(532.549852 303.94625) rotate(-90)"> Bacteroidetes</text>
</g>
</g>
<g id="xtick_12">
<g id="line2d_12">
<g>
<use xlink:href="#m8997bd18ef" x="573.901149" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_12">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(576.660524 307.2025) rotate(-90)"> Actinobacteria</text>
</g>
</g>
<g id="xtick_13">
<g id="line2d_13">
<g>
<use xlink:href="#m8997bd18ef" x="618.011821" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_13">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(620.771196 286.19625) rotate(-90)"> Firmicutes</text>
</g>
</g>
<g id="xtick_14">
<g id="line2d_14">
<g>
<use xlink:href="#m8997bd18ef" x="662.122493" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_14">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif" transform="translate(664.881868 307.935313) rotate(-90)"> Proteobacteria</text>
</g>
</g>
</g>
<g id="matplotlib.axis_2">
<g id="ytick_1">
<g id="line2d_15">
<defs>
<path id="m2121f2343b" d="M 0 0
L -3.5 0
" style="stroke: #000000; stroke-width: 0.8"/>
</defs>
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_15">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="228.439219" transform="rotate(-0 33.603125 228.439219)">0</text>
</g>
</g>
<g id="ytick_2">
<g id="line2d_16">
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="183.814531" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_16">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="187.613749" transform="rotate(-0 33.603125 187.613749)">2</text>
</g>
</g>
<g id="ytick_3">
<g id="line2d_17">
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="142.989061" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_17">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="146.78828" transform="rotate(-0 33.603125 146.78828)">4</text>
</g>
</g>
<g id="ytick_4">
<g id="line2d_18">
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="102.163592" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_18">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="105.962811" transform="rotate(-0 33.603125 105.962811)">6</text>
</g>
</g>
<g id="ytick_5">
<g id="line2d_19">
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="61.338122" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_19">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="65.137341" transform="rotate(-0 33.603125 65.137341)">8</text>
</g>
</g>
<g id="ytick_6">
<g id="line2d_20">
<g>
<use xlink:href="#m2121f2343b" x="40.603125" y="20.512653" style="stroke: #000000; stroke-width: 0.8"/>
</g>
</g>
<g id="text_20">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: end" x="33.603125" y="24.311872" transform="rotate(-0 33.603125 24.311872)">10</text>
</g>
</g>
<g id="text_21">
<text style="font: 10px 'DejaVu Sans', 'Bitstream Vera Sans', 'Computer Modern Sans Serif', 'Lucida Grande', 'Verdana', 'Geneva', 'Lucid', 'Arial', 'Helvetica', 'Avant Garde', sans-serif; text-anchor: middle" x="14.798438" y="115.92" transform="rotate(-90 14.798438 115.92)">Percentage of genome encoding the dGTPase</text>
</g>
</g>
<g id="patch_17">
<path d="M 40.603125 224.64
L 40.603125 7.2
" style="fill: none; stroke: #000000; stroke-width: 0.8; stroke-linejoin: miter; stroke-linecap: square"/>
</g>
<g id="patch_18">
<path d="M 710.203125 224.64
L 710.203125 7.2
" style="fill: none; stroke: #000000; stroke-width: 0.8; stroke-linejoin: miter; stroke-linecap: square"/>
</g>
<g id="patch_19">
<path d="M 40.603125 224.64
L 710.203125 224.64
" style="fill: none; stroke: #000000; stroke-width: 0.8; stroke-linejoin: miter; stroke-linecap: square"/>
</g>
<g id="patch_20">
<path d="M 40.603125 7.2
L 710.203125 7.2
" style="fill: none; stroke: #000000; stroke-width: 0.8; stroke-linejoin: miter; stroke-linecap: square"/>
</g>
</g>
</g>
<defs>
<clipPath id="pc1c4fa5802">
<rect x="40.603125" y="7.2" width="669.6" height="217.44"/>
</clipPath>
</defs>
</svg>
This diff is collapsed.
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment