automatic list systems

components/content/ListSystems.vue

@@ -7,26 +7,34 @@ const props = defineProps<{
 const itemsPerParge = ref(25)
 const search = ref('')
 const sortBy = ref([{ key: 'system', order: 'asc' }])
-// const headers = ref([{
-//     title: "Systems",
-//     key: "system"
-// }, { title: "Articles", key: "doi" }
-// ])
 
+function filterOnlyCapsText(value, query, item) {
+    if (value != null && query != null) {
+        if (typeof value === 'string') {
+            return value.toString().toLowerCase().indexOf(query.toLowerCase()) !== -1
+        }
+        if (typeof value == 'object') {
+            if (value?.name) {
+                return value.name.toString().toLowerCase().indexOf(query.toLowerCase()) !== -1
+            }
+        }
+    }
+    return false
+}
 </script>
 <template>
     <v-card flat color="transparent" class="my-5">
         <v-toolbar>
             <v-toolbar-title>Defense Systems</v-toolbar-title>
 
-            <v-text-field v-model="search" density="compact" variant="underlined" append-inner-icon="mdi-magnify"
-                label="Search" single-line hide-details class="mx-2"></v-text-field>
+            <v-text-field v-model="search" density="compact" variant="underlined" prepend-inner-icon="mdi-magnify"
+                label="Search for defense systems" single-line hide-details class="mx-2" clearable></v-text-field>
         </v-toolbar>
-        <v-data-table :items-per-page="itemsPerParge" v-model:sort-by="sortBy" :headers="props.headers" :items="props.systems"
-            :search="search">
+        <v-data-table :items-per-page="itemsPerParge" v-model:sort-by="sortBy" :headers="props.headers"
+            :custom-filter="filterOnlyCapsText" :items="props.systems" :search="search">
             <template #[`item.system`]="{ item }">
-                <v-chip variant="text" link :to="`/defense-systems/${item.columns.system.toLowerCase()}`">{{
-                    item.columns.system }}</v-chip>
+                <v-chip variant="text" link :to="`${item.columns.system.path}`">{{
+                    item.columns.system.name }}</v-chip>
             </template>
             <template #[`item.doi`]="{ item }">
                 <ArticleDoiList v-if="item.columns?.doi" :items="[item.columns.doi]" :divider="false" />

content/2.defense-systems/abi2.md

 ---
 title: Abi2
-tableDescription:
+tableColumns:
     doi: 10.1016/j.mib.2005.06.006
 ---
 

content/2.defense-systems/abia.md

 ---
 title: AbiA
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 The AbiA system have been describe in a total of 2 subsystems.

content/2.defense-systems/abib.md

 ---
 title: AbiB
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 The AbiB system is composed of one protein: AbiB.

content/2.defense-systems/abic.md

 ---
 title: AbiC
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 The AbiC system is composed of one protein: AbiC.

content/2.defense-systems/abid.md

 ---
 title: AbiD
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 The AbiD system is composed of one protein: AbiD.

content/2.defense-systems/abie.md

 ---
 title: AbiE
-tableDescription: 
-  doi: 10.1093/nar/gkt1419
-  other: blabla
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 AbiE is a family of an anti-phage defense systems. They act through a Toxin-Antitoxin mechanism, and are comprised of a pair of genes, with one gene being toxic while the other confers immunity to this toxicity. 

content/2.defense-systems/abig.md

 ---
 title: AbiG
+tableColumns:
+    doi: 10.1016/j.mib.2005.06.006
 ---
 
 The AbiG system is composed of 2 proteins: AbiGi and, AbiGii.

content/2.defense-systems/abih.md

 ---
 title: AbiH
+tableColumns:
+    doi: 10.1111/j.1574-6968.1996.tb08446.x
 ---
 
 ## Example of genomic structure

content/2.defense-systems/abiv.md

 ---
 title: AbiV
+tableColumns:
+    doi: 10.1128/AEM.00780-08
 ---
 
 ## Example of genomic structure

content/2.defense-systems/rst_paris.md

 ---
 title: Rst_PARIS
+tableColumns:
+    doi: https://doi.org/10.1101/2021.01.21.427644
 ---
 
 ## Description

pages/defense-systems.vue

 <script setup lang="ts">
-const { data, error, pending } = await useAsyncData('list-defense-systems', () => queryContent('/defense-systems').find())
+const { data, error, pending } = await useAsyncData(
+    'list-defense-systems',
+    () => queryContent('/defense-systems').find()
+)
 const defaultHeaders = ref([{ title: 'System', key: "system" }])
-const tableDescriptionKey = ref("tableDescription")
-const headers = computed(() => {
-    if (data?.value && data.value?.length > 0) {
-        const uniqHeaders = Array.from(data.value.reduce((headerSet, df) => {
-            if (df?.[tableDescriptionKey.value]) {
-                return new Set([...headerSet, ...Object.keys(df[tableDescriptionKey.value])])
-            }
-            else { return headerSet }
-        }, new Set()))
-        return [...defaultHeaders.value, ...uniqHeaders.map(value => { return { title: value, key: value } })]
-    }
-    else {
-        return []
-    }
-})
-const systems = computed(() => {
+const tableKey = "tableColumns"
+
+const sanitizedData = computed(() => {
     if (data?.value && data.value?.length > 0) {
-        return data.value.map(({ title, tableDescription }) => {
-            return {
-                system: title,
-                ...tableDescription
+        return data.value?.filter(entry => {
+            if (entry._dir === "old" || entry._dir === "") {
+                return false
             }
+            return true
         })
     } else {
         return []
     }
+})
+
+const headers = computed(() => {
+
+    const uniqHeaders = Array.from(sanitizedData.value.reduce((headerSet, df) => {
+        if (df?.[tableKey]) {
+            return new Set([...headerSet, ...Object.keys(df[tableKey])])
+        }
+        else { return headerSet }
+    }, new Set()))
+    return [...defaultHeaders.value, ...uniqHeaders.map(value => { return { title: value, key: value } })]
+
+})
+const systems = computed(() => {
+    return sanitizedData.value.map((content) => {
+        return {
+            system: { name: content.title, path: content._path },
+            ...content[tableKey]
+        }
+    })
+
 
 })
 
 
-console.log(headers.value)
-console.log(systems.value)
 </script>
 <template>
     <v-card>