fix: did not get all systems

packages/df-wiki-cli/df_wiki_cli/content/main.py

@@ -185,10 +185,10 @@ def systems(
                     with open(file) as f:
                         metadata, _ = frontmatter.parse(f.read())
                         del metadata["layout"]
+                        sanitizedMetadata = {**metadata}
                         if "tableColumns" in metadata:
                             table_data = metadata["tableColumns"]
                             if "PFAM" in table_data:
-                                # print(table_data["PFAM"])
                                 pfams_list = [
                                     pfam.strip()
                                     for pfam in table_data["PFAM"].split(",")
@@ -210,19 +210,18 @@ def systems(
                                             style="red",
                                         )
                                         continue
-                                del metadata["tableColumns"]
-
-                                if "article" in table_data:
-                                    metadata["doi"] = table_data["article"]["doi"]
-                                    if "abstract" in table_data["article"]:
-                                        metadata["abstract"] = table_data["article"][
-                                            "abstract"
-                                        ]
-                                    del table_data["article"]
-                                sanitizedMetadata = {**metadata, **table_data}
-
                                 sanitizedMetadata["PFAM"] = pfam_metadata
-                                systems.append(sanitizedMetadata)
+
+                            if "article" in table_data:
+                                metadata["doi"] = table_data["article"]["doi"]
+                                if "abstract" in table_data["article"]:
+                                    metadata["abstract"] = table_data["article"][
+                                        "abstract"
+                                    ]
+                                del table_data["article"]
+                            del metadata["tableColumns"]
+                            sanitizedMetadata = {**metadata, **table_data}
+                            systems.append(sanitizedMetadata)
 
             json_object = json.dumps(systems, indent=2)
             ty.write(json_object)