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Commit 9f411aaf authored by Remi  PLANEL's avatar Remi PLANEL
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Center images + set max-width

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......@@ -8,7 +8,7 @@ The AbiV system is composed of one protein: AbiV.
Here is an example found in the RefSeq database:
![abiv](/abiv/AbiV.svg){width=750px}
![abiv](/abiv/AbiV.svg){max-width=750px}
AbiV system in the genome of *Lactococcus cremoris* (GCF_017376415.1) is composed of 1 protein: AbiV (WP_011834704.1).
......@@ -18,7 +18,7 @@ The AbiV system is present in a total of 76 different species.
Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %).
![abiv](/abiv/Distribution_AbiV.svg){width=750px}
![abiv](/abiv/Distribution_AbiV.svg){max-width=750px}
*Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The AbiZ system is composed of one protein: AbiZ.
Here is an example found in the RefSeq database:
![abiz](/abiz/AbiZ.svg){width=750px}
![abiz](/abiz/AbiZ.svg){max-width=750px}
AbiZ system in the genome of *Streptococcus oralis* (GCF_019334565.1) is composed of 1 protein: AbiZ (WP_215804505.1).
......@@ -18,7 +18,7 @@ The AbiZ system is present in a total of 191 different species.
Among the 22k complete genomes of RefSeq, this system is present in 831 genomes (3.6 %).
![abiz](/abiz/Distribution_AbiZ.svg){width=750px}
![abiz](/abiz/Distribution_AbiZ.svg){max-width=750px}
*Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Aditi system is composed of 2 proteins: DitB and, DitA.
Here is an example found in the RefSeq database:
![aditi](/aditi/Aditi.svg){width=750px}
![aditi](/aditi/Aditi.svg){max-width=750px}
Aditi system in the genome of *Fusobacterium hwasookii* (GCF_001455105.1) is composed of 2 proteins: DitB (WP_029491896.1)and, DitA (WP_029491897.1).
......@@ -18,7 +18,7 @@ The Aditi system is present in a total of 18 different species.
Among the 22k complete genomes of RefSeq, this system is present in 40 genomes (0.2 %).
![aditi](/aditi/Distribution_Aditi.svg){width=750px}
![aditi](/aditi/Distribution_Aditi.svg){max-width=750px}
*Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -15,23 +15,23 @@ The AVAST system have been describe in a total of 5 subsystems.
Here is some example found in the RefSeq database:
![avast](/avast/AVAST_I.svg){width=750px}
![avast](/avast/AVAST_I.svg){max-width=750px}
AVAST_I subsystem in the genome of *Vibrio sp.* (GCF_905175355.1) is composed of 3 proteins: Avs1A (WP_208445041.1), Avs1B (WP_208445042.1)and, Avs1C (WP_108173272.1).
![avast](/avast/AVAST_II.svg){width=750px}
![avast](/avast/AVAST_II.svg){max-width=750px}
AVAST_II subsystem in the genome of *Escherichia coli* (GCF_018884505.1) is composed of 1 protein: Avs2A (WP_032199984.1).
![avast](/avast/AVAST_III.svg){width=750px}
![avast](/avast/AVAST_III.svg){max-width=750px}
AVAST_III subsystem in the genome of *Enterobacter cancerogenus* (GCF_002850575.1) is composed of 2 proteins: Avs3B (WP_199559884.1)and, Avs3A (WP_101737373.1).
![avast](/avast/AVAST_IV.svg){width=750px}
![avast](/avast/AVAST_IV.svg){max-width=750px}
AVAST_IV subsystem in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: Avs4A (WP_000240574.1).
![avast](/avast/AVAST_V.svg){width=750px}
![avast](/avast/AVAST_V.svg){max-width=750px}
AVAST_V subsystem in the genome of *Leclercia adecarboxylata* (GCF_006171285.1) is composed of 1 protein: Avs5A (WP_139565349.1).
......@@ -41,7 +41,7 @@ The AVAST system is present in a total of 363 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1046 genomes (4.6 %).
![avast](/avast/Distribution_AVAST.svg){width=750px}
![avast](/avast/Distribution_AVAST.svg){max-width=750px}
*Proportion of genome encoding the AVAST system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Azaca system is composed of 3 proteins: ZacA, ZacB and, ZacC.
Here is an example found in the RefSeq database:
![azaca](/azaca/Azaca.svg){width=750px}
![azaca](/azaca/Azaca.svg){max-width=750px}
Azaca system in the genome of *Ornithinimicrobium sp.* (GCF_023923205.1) is composed of 3 proteins: ZacA (WP_252620090.1), ZacB (WP_252620091.1)and, ZacC (WP_252620092.1).
......@@ -18,7 +18,7 @@ The Azaca system is present in a total of 156 different species.
Among the 22k complete genomes of RefSeq, this system is present in 206 genomes (0.9 %).
![azaca](/azaca/Distribution_Azaca.svg){width=750px}
![azaca](/azaca/Distribution_Azaca.svg){max-width=750px}
*Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Borvo system is composed of one protein: BovA.
Here is an example found in the RefSeq database:
![borvo](/borvo/Borvo.svg){width=750px}
![borvo](/borvo/Borvo.svg){max-width=750px}
Borvo system in the genome of *Brevundimonas sp.* (GCF_002002865.1) is composed of 1 protein: BovA_addition (WP_077354142.1).
......@@ -18,7 +18,7 @@ The Borvo system is present in a total of 348 different species.
Among the 22k complete genomes of RefSeq, this system is present in 650 genomes (2.9 %).
![borvo](/borvo/Distribution_Borvo.svg){width=750px}
![borvo](/borvo/Distribution_Borvo.svg){max-width=750px}
*Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -31,11 +31,11 @@ Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 r
Here is some example found in the RefSeq database:
![brex](/brex/BREX_I.svg){width=750px}
![brex](/brex/BREX_I.svg){max-width=750px}
BREX_I subsystem in the genome of *Kaistella sp.* (GCF_020410745.1) is composed of 6 proteins: brxL (WP_226063319.1), pglZA (WP_226063320.1), pglX1 (WP_226063321.1), brxC (WP_226063322.1), brxB_DUF1788 (WP_226063323.1)and, brxA_DUF1819 (WP_226063324.1).
![brex](/brex/BREX_II.svg){width=750px}
![brex](/brex/BREX_II.svg){max-width=750px}
BREX_II subsystem in the genome of *Streptomyces hygroscopicus* (GCF_001447075.1) is composed of 5 proteins: brxD (WP_058082289.1), pglZ2 (WP_058082290.1), pglY (WP_058082291.1), pglX2 (WP_058082292.1)and, pglW (WP_237280966.1).
......@@ -45,7 +45,7 @@ The BREX system is present in a total of 732 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1612 genomes (7.1 %).
![brex](/brex/Distribution_BREX.svg){width=750px}
![brex](/brex/Distribution_BREX.svg){max-width=750px}
*Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
......
......@@ -18,7 +18,7 @@ The BstA system is composed of one protein: BstA.
Here is an example found in the RefSeq database:
![bsta](/bsta/BstA.svg){width=750px}
![bsta](/bsta/BstA.svg){max-width=750px}
BstA system in the genome of *Providencia rustigianii* (GCF_900635875.1) is composed of 1 protein: BstA (WP_126437212.1).
......@@ -28,7 +28,7 @@ The BstA system is present in a total of 81 different species.
Among the 22k complete genomes of RefSeq, this system is present in 236 genomes (1.0 %).
![bsta](/bsta/Distribution_BstA.svg){width=750px}
![bsta](/bsta/Distribution_BstA.svg){max-width=750px}
*Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Bunzi system is composed of 2 proteins: BnzB and, BnzA.
Here is an example found in the RefSeq database:
![bunzi](/bunzi/Bunzi.svg){width=750px}
![bunzi](/bunzi/Bunzi.svg){max-width=750px}
Bunzi system in the genome of *Mammaliicoccus lentus* (GCF_014070215.1) is composed of 2 proteins: BnzB (WP_107556517.1)and, BnzA (WP_107556516.1).
......@@ -18,7 +18,7 @@ The Bunzi system is present in a total of 86 different species.
Among the 22k complete genomes of RefSeq, this system is present in 286 genomes (1.3 %).
![bunzi](/bunzi/Distribution_Bunzi.svg){width=750px}
![bunzi](/bunzi/Distribution_Bunzi.svg){max-width=750px}
*Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -20,7 +20,7 @@ The CapRel system is composed of one protein: CapRel.
Here is an example found in the RefSeq database:
![caprel](/caprel/CapRel.svg){width=750px}
![caprel](/caprel/CapRel.svg){max-width=750px}
CapRel system in the genome of *Escherichia coli* (GCF_003856995.1) is composed of 1 protein: CapRel (WP_000526244.1).
......@@ -30,7 +30,7 @@ The CapRel system is present in a total of 202 different species.
Among the 22k complete genomes of RefSeq, this system is present in 407 genomes (1.8 %).
![caprel](/caprel/Distribution_CapRel.svg){width=750px}
![caprel](/caprel/Distribution_CapRel.svg){max-width=750px}
*Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,19 +8,19 @@ The CBASS system have been describe in a total of 5 subsystems.
Here is some example found in the RefSeq database:
![cbass](/cbass/CBASS_I.svg){width=750px}
![cbass](/cbass/CBASS_I.svg){max-width=750px}
CBASS_I subsystem in the genome of *Rhizobium leguminosarum* (GCF_002243365.1) is composed of 2 proteins: 4TM_new (WP_094230678.1)and, Cyclase_SMODS (WP_094230679.1).
![cbass](/cbass/CBASS_II.svg){width=750px}
![cbass](/cbass/CBASS_II.svg){max-width=750px}
CBASS_II subsystem in the genome of *Parvularcula bermudensis* (GCF_000152825.2) is composed of 3 proteins: 4TM_new (WP_013299178.1), Cyclase_II (WP_148235131.1)and, AG_E2_Prok-E2_B (WP_013299180.1).
![cbass](/cbass/CBASS_III.svg){width=750px}
![cbass](/cbass/CBASS_III.svg){max-width=750px}
CBASS_III subsystem in the genome of *Methylocella tundrae* (GCF_900749825.1) is composed of 5 proteins: Endonuc_small (WP_134490779.1), Cyclase_SMODS (WP_134490781.1), bacHORMA_2 (WP_134490783.1), HORMA (WP_134490785.1)and, TRIP13 (WP_134490787.1).
![cbass](/cbass/CBASS_IV.svg){width=750px}
![cbass](/cbass/CBASS_IV.svg){max-width=750px}
CBASS_IV subsystem in the genome of *Bacillus sp.* (GCF_022809835.1) is composed of 4 proteins: 2TM_type_IV (WP_243501124.1), QueC (WP_206906219.1), TGT (WP_243501126.1)and, Cyclase_SMODS (WP_243501127.1).
......@@ -30,7 +30,7 @@ The CBASS system is present in a total of 1062 different species.
Among the 22k complete genomes of RefSeq, this system is present in 2938 genomes (12.9 %).
![cbass](/cbass/Distribution_CBASS.svg){width=750px}
![cbass](/cbass/Distribution_CBASS.svg){max-width=750px}
*Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The DarTG system is composed of 2 proteins: DarT and, DarG.
Here is an example found in the RefSeq database:
![dartg](/dartg/DarTG.svg){width=750px}
![dartg](/dartg/DarTG.svg){max-width=750px}
DarTG system in the genome of *Mycobacterium tuberculosis* (GCF_904810345.1) is composed of 2 proteins: DarT (WP_003400548.1)and, DarG (WP_003400551.1).
......@@ -18,7 +18,7 @@ The DarTG system is present in a total of 356 different species.
Among the 22k complete genomes of RefSeq, this system is present in 955 genomes (4.2 %).
![dartg](/dartg/Distribution_DarTG.svg){width=750px}
![dartg](/dartg/Distribution_DarTG.svg){max-width=750px}
*Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Dazbog system is composed of 2 proteins: DzbB and, DzbA.
Here is an example found in the RefSeq database:
![dazbog](/dazbog/Dazbog.svg){width=750px}
![dazbog](/dazbog/Dazbog.svg){max-width=750px}
Dazbog system in the genome of *Bacillus cereus* (GCF_001518875.1) is composed of 2 proteins: DzbA (WP_082188833.1)and, DzbB (WP_059303380.1).
......@@ -18,7 +18,7 @@ The Dazbog system is present in a total of 66 different species.
Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %).
![dazbog](/dazbog/Distribution_Dazbog.svg){width=750px}
![dazbog](/dazbog/Distribution_Dazbog.svg){max-width=750px}
*Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -18,7 +18,7 @@ The dCTPdeaminase system is composed of one protein: dCTPdeaminase.
Here is an example found in the RefSeq database:
![dctpdeaminase](/dctpdeaminase/dCTPdeaminase.svg){width=750px}
![dctpdeaminase](/dctpdeaminase/dCTPdeaminase.svg){max-width=750px}
dCTPdeaminase system in the genome of *Vibrio parahaemolyticus* (GCF_009883855.1) is composed of 1 protein: dCTPdeaminase (WP_029845369.1).
......@@ -28,7 +28,7 @@ The dCTPdeaminase system is present in a total of 269 different species.
Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %).
![dctpdeaminase](/dctpdeaminase/Distribution_dCTPdeaminase.svg){width=750px}
![dctpdeaminase](/dctpdeaminase/Distribution_dCTPdeaminase.svg){max-width=750px}
*Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -10,7 +10,7 @@ The dGTPase system is composed of one protein: Sp_dGTPase.
Here is an example found in the RefSeq database:
![dGTPase](/dGTPase.svg){width=750px}
![dGTPase](/dGTPase.svg){max-width=750px}
dGTPase system in the genome of *Acinetobacter pittii* (GCF_002012285.1) is composed of 1 protein: Sp_dGTPase (WP_213033921.1).
......@@ -20,7 +20,7 @@ The dGTPase system is present in a total of 353 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes (6.7 %).
![Distribution_dGTPase](/Distribution_dGTPase.svg){width=750px}
![Distribution_dGTPase](/Distribution_dGTPase.svg){max-width=750px}
*Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -26,11 +26,11 @@ These three core genes are accompanied by a methyltransferase, which can be eith
Here is some example found in the RefSeq database:
![disarm](/disarm/DISARM_1.svg){width=750px}
![disarm](/disarm/DISARM_1.svg){max-width=750px}
DISARM_1 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_009676885.1) is composed of 6 proteins: drmD (WP_023093122.1), drmMI (WP_023115027.1), drmD (WP_023093126.1), drmA (WP_033993408.1), drmB (WP_023093129.1)and, drmC (WP_031637507.1).
![disarm](/disarm/DISARM_2.svg){width=750px}
![disarm](/disarm/DISARM_2.svg){max-width=750px}
DISARM_2 subsystem in the genome of *Bacillus paralicheniformis* (GCF_009497935.1) is composed of 5 proteins: drmMII (WP_020450482.1), drmC (WP_020450481.1), drmB (WP_025810358.1), drmA (WP_020450479.1)and, drmE (WP_020450478.1).
......@@ -40,7 +40,7 @@ The DISARM system is present in a total of 214 different species.
Among the 22k complete genomes of RefSeq, this system is present in 341 genomes (1.5 %).
![disarm](/disarm/Distribution_DISARM.svg){width=750px}
![disarm](/disarm/Distribution_DISARM.svg){max-width=750px}
*Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The DmdDE system is composed of 2 proteins: DdmE and, DdmD.
Here is an example found in the RefSeq database:
![dmdde](/dmdde/DdmDE.svg){width=750px}
![dmdde](/dmdde/DdmDE.svg){max-width=750px}
DdmDE subsystem in the genome of *Vibrio vulnificus* (GCF_002850455.1) is composed of 2 proteins: DdmE (WP_101957190.1)and, DdmD (WP_101957191.1).
......@@ -18,7 +18,7 @@ The DmdDE system is present in a total of 50 different species.
Among the 22k complete genomes of RefSeq, this system is present in 145 genomes (0.6 %).
![dmdde](/dmdde/Distribution_DmdDE.svg){width=750px}
![dmdde](/dmdde/Distribution_DmdDE.svg){max-width=750px}
*Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,11 +8,11 @@ The Dnd system have been describe in a total of 2 subsystems.
Here is some example found in the RefSeq database:
![dnd](/dnd/Dnd_ABCDE.svg){width=750px}
![dnd](/dnd/Dnd_ABCDE.svg){max-width=750px}
Dnd_ABCDE subsystem in the genome of *Vibrio tritonius* (GCF_001547935.1) is composed of 6 proteins: DndA (WP_068714508.1), DndB (WP_068714510.1), DndC (WP_068714512.1), DndD (WP_068714514.1), DndE (WP_068714516.1)and, DndD (WP_068714526.1).
![dnd](/dnd/Dnd_ABCDEFGH.svg){width=750px}
![dnd](/dnd/Dnd_ABCDEFGH.svg){max-width=750px}
Dnd_ABCDEFGH subsystem in the genome of *Vibrio sp.* (GCF_023716625.1) is composed of 8 proteins: DptF (WP_252041715.1), DptG (WP_252041716.1), DptH (WP_252041717.1), DndE (WP_252041720.1), DndD (WP_252041722.1), DndC (WP_252041723.1), DndB (WP_252041724.1)and, DndA (WP_252041725.1).
......@@ -22,7 +22,7 @@ The Dnd system is present in a total of 218 different species.
Among the 22k complete genomes of RefSeq, this system is present in 388 genomes (1.7 %).
![dnd](/dnd/Distribution_Dnd.svg){width=750px}
![dnd](/dnd/Distribution_Dnd.svg){max-width=750px}
*Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Dodola system is composed of 2 proteins: DolA and, DolB.
Here is an example found in the RefSeq database:
![dodola](/dodola/Dodola.svg){width=750px}
![dodola](/dodola/Dodola.svg){max-width=750px}
Dodola system in the genome of *Streptococcus thermophilus* (GCF_015190465.1) is composed of 2 proteins: DolA (WP_084825722.1)and, DolB (WP_084825723.1).
......@@ -18,7 +18,7 @@ The Dodola system is present in a total of 91 different species.
Among the 22k complete genomes of RefSeq, this system is present in 313 genomes (1.4 %).
![dodola](/dodola/Distribution_Dodola.svg){width=750px}
![dodola](/dodola/Distribution_Dodola.svg){max-width=750px}
*Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
......@@ -8,7 +8,7 @@ The Dpd system is composed of 15 proteins: FolE, QueD, DpdC, DpdA, DpdB, QueC, D
Here is an example found in the RefSeq database:
![dpd](/dpd/Dpd.svg){width=750px}
![dpd](/dpd/Dpd.svg){max-width=750px}
Dpd system in the genome of *Thalassotalea crassostreae* (GCF_001831495.1) is composed of 15 proteins: QueE (WP_068546614.1), DpdE (WP_068546526.1), DpdF (WP_068546528.1), DpdG (WP_068546530.1), DpdH (WP_070795901.1), DpdI (WP_068546533.1), DpdJ (WP_068546534.1), DpdK (WP_082897170.1), DpdD (WP_068546535.1), QueC (WP_068546536.1), DpdB (WP_068546537.1), DpdA (WP_068546538.1), DpdC (WP_157726628.1), QueD (WP_068546540.1)and, FolE (WP_068546542.1).
......@@ -18,7 +18,7 @@ The Dpd system is present in a total of 100 different species.
Among the 22k complete genomes of RefSeq, this system is present in 226 genomes (1.0 %).
![dpd](/dpd/Distribution_Dpd.svg){width=750px}
![dpd](/dpd/Distribution_Dpd.svg){max-width=750px}
*Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.*
......
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