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c61978a9
Commit
c61978a9
authored
10 months ago
by
Remi PLANEL
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create a dict system -> model version
parent
1be65f90
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data/system-model-version.yaml
+147
-0
147 additions, 0 deletions
data/system-model-version.yaml
packages/df-wiki-cli/df_wiki_cli/content/main.py
+5
-0
5 additions, 0 deletions
packages/df-wiki-cli/df_wiki_cli/content/main.py
with
152 additions
and
0 deletions
data/system-model-version.yaml
0 → 100644
+
147
−
0
View file @
c61978a9
AbiA
:
1.2.2
AbiB
:
1.2.2
AbiC
:
1.2.2
AbiD
:
1.2.2
AbiE
:
1.2.2
AbiG
:
1.2.2
AbiH
:
1.2.2
AbiI
:
1.2.2
AbiJ
:
1.2.2
AbiK
:
1.2.2
AbiL
:
1.2.2
AbiN
:
1.2.2
AbiO
:
1.2.2
AbiP2
:
1.2.2
AbiQ
:
1.2.2
AbiR
:
1.2.2
AbiT
:
1.2.2
AbiU
:
1.2.2
AbiV
:
1.2.2
AbiZ
:
1.2.2
Aditi
:
1.2.2
Avs
:
1.2.3
Azaca
:
1.2.2
BREX
:
1.2.2
Borvo
:
1.2.2
BstA
:
1.2.2
Bunzi
:
1.2.2
Butters_gp30_gp31
:
1.2.3
Butters_gp57r
:
1.2.3
CBASS
:
1.2.2
CapRel
:
1.2.2
Charlie_gp32
:
1.2.3
DISARM
:
1.2.2
DRT
:
1.2.2
DarTG
:
1.2.2
Dazbog
:
1.2.2
DdmDE
:
1.2.4
Detocs
:
1.2.3
Dnd
:
1.2.2
Dodola
:
1.2.2
Dpd
:
1.2.2
Druantia
:
1.2.2
Dsr
:
1.2.2
Eleos
:
1.2.2
FS_GIY_YIG
:
1.2.3
FS_HEPN_TM
:
1.2.3
FS_HP
:
1.2.3
FS_HP_SDH_sah
:
1.2.3
FS_HsdR_like
:
1.2.3
FS_Sma
:
1.2.3
GAPS1
:
1.2.3
GAPS2
:
1.2.3
GAPS4
:
1.2.3
GAPS6
:
1.2.3
Gabija
:
1.2.2
Gao_Ape
:
1.2.2
Gao_Her
:
1.2.2
Gao_Hhe
:
1.2.2
Gao_Iet
:
1.2.2
Gao_Mza
:
1.2.2
Gao_Ppl
:
1.2.2
Gao_Qat
:
1.2.2
Gao_RL
:
1.2.2
Gao_TerY
:
1.2.2
Gao_Tmn
:
1.2.2
Gao_Upx
:
1.2.2
GasderMIN
:
1.2.2
Hachiman
:
1.2.2
Hna
:
1.2.3
ISG15-like
:
1.2.2
JukAB
:
1.2.3
Kiwa
:
1.2.2
Lamassu-Fam
:
1.2.3
Lit
:
1.2.2
MADS
:
1.2.3
MMB_gp29_gp30
:
1.2.3
Menshen
:
1.2.2
Mok_Hok_Sok
:
1.2.2
Mokosh
:
1.2.2
MqsRAC
:
1.2.2
NLR
:
1.2.2
Nhi
:
1.2.2
NixI
:
1.2.2
Old_exonuclease
:
1.2.2
Olokun
:
1.2.2
PD-Lambda-1
:
1.2.2
PD-Lambda-2
:
1.2.2
PD-Lambda-3
:
1.2.2
PD-Lambda-4
:
1.2.2
PD-Lambda-5
:
1.2.2
PD-Lambda-6
:
1.2.2
PD-T4-1
:
1.2.2
PD-T4-10
:
1.2.2
PD-T4-2
:
1.2.2
PD-T4-3
:
1.2.2
PD-T4-4
:
1.2.2
PD-T4-5
:
1.2.2
PD-T4-6
:
1.2.2
PD-T4-7
:
1.2.2
PD-T4-8
:
1.2.2
PD-T4-9
:
1.2.2
PD-T7-1
:
1.2.2
PD-T7-2
:
1.2.2
PD-T7-3
:
1.2.2
PD-T7-4
:
1.2.2
PD-T7-5
:
1.2.2
Panchino_gp28
:
1.2.3
Paris
:
1.2.3
PfiAT
:
1.2.2
Phrann_gp29_gp30
:
1.2.3
Pif
:
1.2.2
PrrC
:
1.2.2
PsyrTA
:
1.2.2
Pycsar
:
1.2.2
RADAR
:
1.2.2
Retron
:
1.2.2
RexAB
:
1.2.2
RloC
:
1.2.2
RnlAB
:
1.2.2
RosmerTA
:
1.2.2
Rst_2TM_1TM_TIR
:
1.2.2
Rst_3HP
:
1.2.2
Rst_DUF4238
:
1.2.2
Rst_HelicaseDUF2290
:
1.2.2
Rst_Hydrolase-3Tm
:
1.2.2
Rst_RT-nitrilase-Tm
:
1.2.2
Rst_TIR-NLR
:
1.2.2
Rst_gop_beta_cll
:
1.2.2
SEFIR
:
1.2.2
SanaTA
:
1.2.2
Septu
:
1.2.2
Shango
:
1.2.2
Shedu
:
1.2.2
ShosTA
:
1.2.2
SoFIC
:
1.2.2
SpbK
:
1.2.2
SspBCDE
:
1.2.2
Stk2
:
1.2.2
Thoeris
:
1.2.2
Tiamat
:
1.2.2
Uzume
:
1.2.2
Viperin
:
1.2.2
Wadjet
:
1.2.2
Zorya
:
1.2.2
dCTPdeaminase
:
1.2.2
dGTPase
:
1.2.2
pAgo
:
1.2.3
This diff is collapsed.
Click to expand it.
packages/df-wiki-cli/df_wiki_cli/content/main.py
+
5
−
0
View file @
c61978a9
import
typer
import
sys
import
json
import
yaml
import
pandas
as
pd
import
csv
import
tempfile
...
...
@@ -281,6 +282,7 @@ def system_operon_structure(
model_dirs
=
list
(
download_model_release
(
releases
))
systems
=
[]
# system_model_version = {}
with
open
(
structure
)
as
tsvfile
:
tsvreader
=
csv
.
DictReader
(
tsvfile
,
delimiter
=
"
\t
"
)
for
row
in
tsvreader
:
...
...
@@ -298,6 +300,7 @@ def system_operon_structure(
):
system_genes_got
.
add
(
system_id
)
def_path
=
find_model_definition
(
system
,
subsystem
,
list_paths
)
# system_model_version[system] = def_path["version"]
in_exchangeables
=
False
current_gene
=
{}
exchangeables
=
[]
...
...
@@ -356,6 +359,8 @@ def system_operon_structure(
# gene["alternatives"] = ",".join(gene["alternatives"])
gene
[
"
id
"
]
=
id
writer
.
writerow
(
gene
)
# with open("./system-model-version.yaml", "w") as f_out:
# yaml.dump(system_model_version, f_out, default_flow_style=False)
def
download_model_release
(
releases
):
...
...
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