Merge branch 'operon-struct-type' into operon-struct-type-article-update

components/OperonStructure.vue

@@ -139,8 +139,23 @@ function drawGenes(genesGroup) {
             enter => {
                 const g = enter.append("g")
                     .classed("gene", true);
-                g.append("path").classed("gene", true)
+                g.append("path")
+                    .classed("gene", true)
+
                 g.append("image")
+                    .on("mouseover", function (event) {
+                        console.log(event.srcElement)
+                        d3.select(event.srcElement.previousSibling)
+                            .attr("stroke-width", 4)
+                            .attr("stroke", "darkred")
+                        d3.select(event.srcElement).attr("cursor", "pointer")
+                    })
+                    .on("mouseout", function (event) {
+                        d3.select(event.srcElement.previousSibling)
+                            .attr("stroke-width", 0)
+                            .attr("stroke", null)
+                        d3.select(event.srcElement).attr("cursor", "unset")
+                    })
                 g.append("text")
                     // .attr("fill", "white")
                     .classed("gene-label", true)
@@ -153,14 +168,12 @@ function drawGenes(genesGroup) {
             exit => exit.remove()
         )
     genesSelection.attr("transform", d => `translate(${d.x},${d.y})`)
-    genesGroup.select("image")
+    genesSelection.select("image")
         .attr("href", d => d?.structImg)
         .attr("width", d => d.width)
         .attr("height", d => d.height)
         .on("click", function (event) {
-            console.log(event)
             const data = d3.select(this).data()
-            console.log(data)
             structureBasket.set(data.map(s => s.structPath))
 
         })

components/content/PdockqMatrix.vue

@@ -164,11 +164,12 @@ function on(mark) {
 
         r.on("mouseover", function (event) {
             const elem = d3.select(event.srcElement)
-            const elemFill = d3.color(elem.attr("fill")).darker()
-            elem.attr("stroke-width", 4).attr("stroke", elemFill)
+            const fillColor = elem.attr("fill")
+            const elemFill = d3.color(fillColor).darker()
+            elem.attr("stroke-width", 4).attr("stroke", elemFill.toString()).attr("cursor", "pointer")
         })
         r.on("mouseout", function (event) {
-            d3.select(event.srcElement).attr("stroke-width", undefined).attr("stroke", undefined)
+            d3.select(event.srcElement).attr("stroke-width", null).attr("stroke", null).attr("cursor", "unset")
         })
 
         return g;

deploy/df-wiki/values.yaml

@@ -36,7 +36,6 @@ securityContext:
   allowPrivilegeEscalation: false
   runAsUser: 101
   runAsGroup: 101
-  allowPrivilegeEscalation: false
   # capabilities:
   #   drop:
   #   - ALL

packages/df-wiki-cli/df_wiki_cli/content/main.py

@@ -616,7 +616,7 @@ def markdown(
 
                     new_f_str = re.sub(
                         r"#{2}\s+Structure.*?#{2}\s+Experimental\s+validation",
-                        "## Structure\n\n### List predicted structures\n\n::article-structure\n::\n\n### pDockQ matrix\n\n::pdockq-matrix\n::\n\n## Experimental validation",
+                        "## Structure\n\n::article-structure\n::\n\n## Experimental validation",
                         all_file,
                         flags=re.DOTALL | re.IGNORECASE,
                     )