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abii move relevant abstract, add description add, modify mermaid

Closed ftesson requested to merge ftesson_abii_request into main
@@ -9,9 +9,27 @@ tableColumns:
@@ -9,9 +9,27 @@ tableColumns:
Sensor: Unknown
Sensor: Unknown
Activator: Unknown
Activator: Unknown
Effector: Unknown
Effector: Unknown
 
contributors:
 
- Florian Tesson
 
relevantAbstracts:
 
- doi: 10.1023/A:1002027321171
 
- doi: 10.1016/j.mib.2005.06.006
 
- doi: 10.1016/s0168-1656(97)01692-1
---
---
# AbiI
# AbiI
 
 
## Description
 
AbiI is a single gene defense system discovered in 1997 :ref{doi=10.3168/jds.S0022-0302(98)75713-3}.
 
 
AbiI is one of the so-called "Abi" systems for "Abortive infection" discovered in the 90's in research related to the dairy industry :ref{doi=10.1016/j.mib.2005.06.006}. Even though, their name correspond to abortive infection, their mechanism of action does not necessarily correspond to an abortive infection. AbiI is classified as Abortive infection in :ref{doi=10.1016/j.mib.2023.102312}.
 
 
This system is only composed of one single gene with no known domains.
 
 
## Molecular mechanism
 
 
As far as we are aware, the molecular mechanism is unknown.
 
## Example of genomic structure
## Example of genomic structure
The AbiI system is composed of one protein: AbiI.
The AbiI system is composed of one protein: AbiI.
@@ -46,12 +64,12 @@ dataUrl: /abii/AbiI__AbiI-plddts_90.31131.pdb
@@ -46,12 +64,12 @@ dataUrl: /abii/AbiI__AbiI-plddts_90.31131.pdb
## Experimental validation
## Experimental validation
<mermaid>
<mermaid>
graph LR;
graph LR;
Chopin_2005[<a href='https://doi.org/10.1016/j.mib.2005.06.006'>Chopin et al., 2005</a>] --> Origin_0
Su_1997[<a href='https://doi.org/10.1016/s0168-1656(97)01692-1'>Su et al., 1997</a>] --> Origin_0
Origin_0[lactococcal plasmid
Origin_0[lactococcal plasmid
<a href='https://ncbi.nlm.nih.gov/protein/AAB66882.1'>AAB66882.1</a>] --> Expressed_0[lactococci]
<a href='https://ncbi.nlm.nih.gov/protein/AAB66882.1'>AAB66882.1</a>] --> Expressed_0[lactococci]
Expressed_0[lactococci] ----> 936 & c2
Expressed_0[lactococci] ----> 936 & c2
subgraph Title1[Reference]
subgraph Title1[Reference]
Chopin_2005
Su_1997
end
end
subgraph Title2[System origin]
subgraph Title2[System origin]
Origin_0
Origin_0
@@ -68,13 +86,4 @@ end
@@ -68,13 +86,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1023/A:1002027321171
- doi: 10.1016/j.mib.2005.06.006
---
::
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