Update operation on NCBI taxonomy

Content

• Generate NCBI taxonomy hierarchy
• Create link to parent for NCBI tax

Related Issue

Closes #16 (closed)

added Backend:api Backend:core Doing Python labels

added 1 commit

• fa0b4b67 - add link of taxonomy to parents

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TO DO left:

• improve update_batch? update only if differences observed?
• create hierarchy

added 1 commit

• c780bde4 - generate NCBI taxonomy hierarchy

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Still issue with downloading is occuring in the task. The process seems to be stuck.

TO DO:

• check if image has internet access and try the process manually from the image
• fix issue -> no issue actually seems to work when retrying
• route for hierarchy creation
• response model for admin API calls

added 2 commits

• f0ea3631 - schemas for celery tasks
• 0d121751 - route to create NCBI tax hierarchy

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marked this merge request as ready

changed title from Draft: Resolve "Update operation on NCBI taxonomy" to Update operation on NCBI taxonomy

changed the description

Process for hierarchy creation is still a bit slow (around 40minutes), might still be improved.

merged

mentioned in commit 39e69dec