Merge branch 'dev' of gitlab.pasteur.fr:metagenomics/metagenedb into dev

ci/deploy/deploy.sh

@@ -9,6 +9,9 @@ kubectl create secret docker-registry -n ${NAMESPACE} registry-gitlab --docker-s
 ## SECRET_KEY for Django
 kubectl delete secret backend-secret -n ${NAMESPACE} --ignore-not-found=true
 kubectl create secret generic backend-secret -n ${NAMESPACE} --from-literal=secret_key=${SECRET_KEY}
+## Credentials for postgres
+kubectl delete secret postgresql-credentials -n ${NAMESPACE} --ignore-not-found=true
+kubectl create secret generic postgresql-credentials -n ${NAMESPACE} --from-literal=username=${POSTGRES_USER} --from-literal=password=${POSTGRES_PASSWORD} --from-literal=database=${POSTGRES_DB}
 
 # Deployement
 ## DB

ci/kubernetes/backend.yaml

@@ -33,11 +33,11 @@ spec:
             secretKeyRef:
               name: postgresql-credentials
               key: username
-        # - name: DATABASE_PASSWORD
-        #   valueFrom:
-        #     secretKeyRef:
-        #       name: postgresql-credentials
-        #       key: password
+        - name: DATABASE_PASSWORD
+          valueFrom:
+            secretKeyRef:
+              name: postgresql-credentials
+              key: password
         - name: SECRET_KEY
           valueFrom:
             secretKeyRef:

ci/kubernetes/ingress.yaml

@@ -23,7 +23,7 @@ spec:
         backend:
           serviceName: backend
           servicePort: 8000
-      - path: /catalog
+      - path: /api
         backend:
           serviceName: backend
           servicePort: 8000
\ No newline at end of file

ci/kubernetes/postgresql.yaml

@@ -11,16 +11,6 @@ spec:
       requests:
         storage: 8Gi
 ---
-apiVersion: v1
-kind: Secret
-metadata:
-  name: postgresql-credentials
-type: Opaque
-data:
-  username: bWV0YWdlbmVkYl91c2VyCg==
-  password: bWV0YWdlbmVkYl9kZXYK
-  database: bWV0YWdlbmVkYl9kZXYK
----
 apiVersion: apps/v1
 kind: Deployment
 metadata:
@@ -54,11 +44,11 @@ spec:
             secretKeyRef:
               name: postgresql-credentials
               key: database
-        # - name: POSTGRES_PASSWORD
-        #   valueFrom:
-        #     secretKeyRef:
-        #       name: postgresql-credentials
-        #       key: password
+        - name: POSTGRES_PASSWORD
+          valueFrom:
+            secretKeyRef:
+              name: postgresql-credentials
+              key: password
         ports:
         - containerPort: 5432
           name: postgresql