Fix source when loading KEGG using API

.gitignore

+.DS_Store
 __pycache__/
 *.egg-info/
 .env

backend/scripts/populate_db/load_kegg_ko.py

@@ -18,6 +18,8 @@ KEGG_KO_LIST_API = "http://rest.kegg.jp/list/ko"
 
 class ImportKEGGKO(object):
     METAGENEDB_FUNCTION_API = MetageneDBCatalogFunctionAPI
+    ORM_SOURCE_KEY = 'source'
+    KEGG_SOURCE = 'kegg'
 
     def __init__(self, url, kegg_ko_list_api=KEGG_KO_LIST_API):
         self.kegg_ko_list_api = kegg_ko_list_api
@@ -25,7 +27,7 @@ class ImportKEGGKO(object):
         self.processed_kegg = 0
         self.created_kegg = 0
         self.updated_kegg = 0
-        self.skipped_kegg = 0
+        # self.skipped_kegg = 0
 
     def load_all_kegg_ko(self, chunk_size=1000):
         all_ko_response = requests.get(self.kegg_ko_list_api)
@@ -34,6 +36,8 @@ class ImportKEGGKO(object):
         self.total_kegg_nb = len(all_ko)
         for chunk in generate_chunks(all_ko, chunk_size):
             ko_chunk = [KEGGLineParser.ko_list(i) for i in chunk]
+            for i in ko_chunk:
+                i.update({self.ORM_SOURCE_KEY: self.KEGG_SOURCE})
             response = self.metagenedb_function_api.put(ko_chunk)
             self.created_kegg += response.get('created').get('count')
             self.updated_kegg += response.get('updated').get('count')
@@ -42,7 +46,7 @@ class ImportKEGGKO(object):
             time.sleep(1)
         logger.info("[DONE] %s/%s KEGG KO created.", self.created_kegg, self.total_kegg_nb)
         logger.info("[DONE] %s/%s KEGG KO updated.", self.updated_kegg, self.total_kegg_nb)
-        logger.info("[DONE] %s/%s KEGG KO skipped.", self.skipped_kegg, self.total_kegg_nb)
+        # logger.info("[DONE] %s/%s KEGG KO skipped.", self.skipped_kegg, self.total_kegg_nb)
 
 
 def parse_arguments():