Commit 9ca50215 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

Add link from gene list and deal with no information from kegg and taxonomy

parent d0c1c962
Pipeline #18075 passed with stages
in 2 minutes and 8 seconds
......@@ -7,12 +7,17 @@
KEGG Function
</v-toolbar-title>
</v-toolbar>
<div class="text-xs-center" v-if="kegg_details.length == 0">
<div class="text-xs-center" v-if="kegg_id == '' || request_done == false">
<v-progress-circular
indeterminate
color="genefunction"
></v-progress-circular>
</div>
<div v-else-if="kegg_details.length == 0" class="text-xs-center">
<v-btn block color="tertiary">
No annotation for this entry
</v-btn>
</div>
<v-list v-else>
<!-- Basic information about the KEGG KO-->
<template v-for="(item, index) in kegg_details">
......@@ -136,10 +141,15 @@ export default {
kegg_details: [],
kegg_expand_details: [],
kegg_references: [],
request_done: false,
};
},
methods: {
getKeggDetail() {
if (this.kegg_id == "no_kegg") {
this.request_done = true;
return;
}
axios.get('http://togows.org/entry/kegg-orthology/' + this.kegg_id + '.json', {
headers: {
Accept: 'application/json',
......@@ -152,6 +162,9 @@ export default {
})
.catch((error) => {
console.log(error);
})
.finally(() => {
this.request_done = true
});
},
buildKeggDetails(response) {
......
......@@ -7,12 +7,17 @@
Taxonomy
</v-toolbar-title>
</v-toolbar>
<div class="text-xs-center" v-if="taxonomy_detail.length == 0">
<div class="text-xs-center" v-if="taxonomy_id == '' || request_done == false">
<v-progress-circular
indeterminate
color="taxonomy"
></v-progress-circular>
</div>
<div v-else-if="taxonomy_detail.length == 0" class="text-xs-center">
<v-btn block color="tertiary">
No annotation for this entry
</v-btn>
</div>
<v-list v-else>
<template v-for="(item, index) in taxonomy_detail">
<v-divider
......@@ -46,10 +51,15 @@ export default {
data() {
return {
taxonomy_detail: [],
request_done: false,
};
},
methods: {
getTaxonomyDetail() {
if (this.taxonomy_id == 'no_taxonomy') {
this.request_done = true;
return;
}
axios.get('/api/catalog/v1/taxonomy/' + this.taxonomy_id, {
headers: {
Accept: 'application/json',
......@@ -93,6 +103,9 @@ export default {
})
.catch((error) => {
console.log(error);
})
.finally(() => {
this.request_done = true
});
}
}
......
......@@ -95,8 +95,18 @@ export default {
content: response.data.length,
},
];
this.kegg_id = response.data.functions[0].function_id;
this.taxonomy_id = response.data.taxonomy.tax_id;
if (response.data.functions.length > 0) {
this.kegg_id = response.data.functions[0].function_id;
}
else {
this.kegg_id = "no_kegg"
}
if (response.data.taxonomy) {
this.taxonomy_id = response.data.taxonomy.tax_id;
}
else {
this.taxonomy_id = "no_taxonomy"
}
})
.catch((error) => {
console.log(error);
......
......@@ -19,7 +19,7 @@
:items="genes"
>
<template v-slot:items="props">
<td>{{ props.item.gene_id }}</td>
<td><a :href="/gene-detail/ + props.item.gene_id">{{ props.item.gene_id }}</a></td>
<td>{{ props.item.gene_name }}</td>
<td class="text-xs">{{ props.item.length }}</td>
<td class="text-xs"></td>
......
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