Commit b914eeed authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

Start architecture for the app with docker-compose

parent 644f7717
# metagenedb
# Metagenedb
Django based project to build metagenomics genes catalog
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Django based project to build metagenomics genes catalog and tools
to play with it and contact external services.
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version: '3.7'
services:
web:
restart: always
build: ./web
ports:
- "8000:8000"
env_file: .env
environment:
DEBUG: "true"
depends_on:
- postgres
command: python /metagenedb/manage.py runserver 0.0.0.0:8000
postgres:
restart: always
image: postgres:latest
ports:
- "5433:5432"
FROM python:3.7
ENV PYTHONDONTWRITEBYTECODE 1
ENV PYTHONUNBUFFERED 1
WORKDIR /metagenedb
COPY requirements.txt /metagenedb/
RUN pip install -r requirements.txt
# Copy the project
COPY . /metagenedb/
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#!/usr/bin/env python
"""Django's command-line utility for administrative tasks."""
import os
import sys
def main():
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'metagenedb.settings')
try:
from django.core.management import execute_from_command_line
except ImportError as exc:
raise ImportError(
"Couldn't import Django. Are you sure it's installed and "
"available on your PYTHONPATH environment variable? Did you "
"forget to activate a virtual environment?"
) from exc
execute_from_command_line(sys.argv)
if __name__ == '__main__':
main()
"""
Django settings for metagenedb project.
Generated by 'django-admin startproject' using Django 2.2.2.
For more information on this file, see
https://docs.djangoproject.com/en/2.2/topics/settings/
For the full list of settings and their values, see
https://docs.djangoproject.com/en/2.2/ref/settings/
"""
import os
# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/2.2/howto/deployment/checklist/
# SECURITY WARNING: keep the secret key used in production secret!
SECRET_KEY = '01^q5^z**8vfdd$u4&b0w!2thaj=3b93+i*v$&kwmz6&ix6x8)'
# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True
# This can be used to toggle between your local testing db (db.sqlite3) and the PostgreSQL backend:
DOCKER = True
if DEBUG:
# This value is not safe for production usage. Refer to the Django documentation for more information.
ALLOWED_HOSTS = ['*']
# Application definition
INSTALLED_APPS = [
'django.contrib.admin',
'django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sessions',
'django.contrib.messages',
'django.contrib.staticfiles',
]
MIDDLEWARE = [
'django.middleware.security.SecurityMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.common.CommonMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'django.middleware.clickjacking.XFrameOptionsMiddleware',
]
ROOT_URLCONF = 'metagenedb.urls'
TEMPLATES = [
{
'BACKEND': 'django.template.backends.django.DjangoTemplates',
'DIRS': [],
'APP_DIRS': True,
'OPTIONS': {
'context_processors': [
'django.template.context_processors.debug',
'django.template.context_processors.request',
'django.contrib.auth.context_processors.auth',
'django.contrib.messages.context_processors.messages',
],
},
},
]
WSGI_APPLICATION = 'metagenedb.wsgi.application'
# Database
# https://docs.djangoproject.com/en/2.2/ref/settings/#databases
if DOCKER:
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.postgresql',
'NAME': 'postgres',
'USER': 'postgres',
'HOST': 'postgres',
'PORT': 5432,
}
}
else:
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.sqlite3',
'NAME': os.path.join(BASE_DIR, 'db.sqlite3'),
}
}
# Password validation
# https://docs.djangoproject.com/en/2.2/ref/settings/#auth-password-validators
AUTH_PASSWORD_VALIDATORS = [
{
'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
},
]
# Internationalization
# https://docs.djangoproject.com/en/2.2/topics/i18n/
LANGUAGE_CODE = 'en-us'
TIME_ZONE = 'Europe/Paris'
USE_I18N = True
USE_L10N = True
USE_TZ = True
# Static files (CSS, JavaScript, Images)
# https://docs.djangoproject.com/en/2.2/howto/static-files/
STATIC_URL = '/static/'
"""metagenedb URL Configuration
The `urlpatterns` list routes URLs to views. For more information please see:
https://docs.djangoproject.com/en/2.2/topics/http/urls/
Examples:
Function views
1. Add an import: from my_app import views
2. Add a URL to urlpatterns: path('', views.home, name='home')
Class-based views
1. Add an import: from other_app.views import Home
2. Add a URL to urlpatterns: path('', Home.as_view(), name='home')
Including another URLconf
1. Import the include() function: from django.urls import include, path
2. Add a URL to urlpatterns: path('blog/', include('blog.urls'))
"""
from django.contrib import admin
from django.urls import path
urlpatterns = [
path('admin/', admin.site.urls),
]
"""
WSGI config for metagenedb project.
It exposes the WSGI callable as a module-level variable named ``application``.
For more information on this file, see
https://docs.djangoproject.com/en/2.2/howto/deployment/wsgi/
"""
import os
from django.core.wsgi import get_wsgi_application
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'metagenedb.settings')
application = get_wsgi_application()
django>=2.1
psycopg2
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