Commits · improve-db-queries · Metagenomics / metagenedb · GitLab

Snippets Groups Projects

Mar 26, 2021
- set indexes on gene columns · 9b87c9ca
  Kenzo-Hugo Hillion authored 4 years ago
  
  9b87c9ca
Sep 21, 2020
- add property to build csv within gene instance directly · 01a8a5a8
  Kenzo-Hugo Hillion authored 4 years ago
  
  01a8a5a8
Sep 18, 2020
- allow to retrieve more genes for metadata csv · b7da4530
  Kenzo-Hugo Hillion authored 4 years ago
  
  b7da4530
- add full tax to csv of metadata · f620d023
  Kenzo-Hugo Hillion authored 4 years ago
  
  f620d023
Sep 17, 2020
- add migration for fix deprecated JSONfield · a7abdb2b
  Kenzo-Hugo Hillion authored 4 years ago
  
  a7abdb2b
Sep 15, 2020
- add test for compute_one_line_detailed_taxonomy · cf247233
  Kenzo-Hugo Hillion authored 4 years ago
  
  cf247233
- fix flake8 · a4a79948
  Kenzo-Hugo Hillion authored 4 years ago
  
  a4a79948
- add property to Taxonomy to retrieve one line taxonomy description · b1fac06e
  Kenzo-Hugo Hillion authored 4 years ago
  
  b1fac06e
Aug 14, 2020
- update import for factory_boy 3.x · 3e4aa2c6
  Kenzo-Hugo Hillion authored 4 years ago
  
  3e4aa2c6
- update version of dabeplech · 6d9e0518
  Kenzo-Hugo Hillion authored 4 years ago
  
  6d9e0518
Aug 10, 2020
- update last url requested from KEGGAPI and remove togows name · 27fbcb9a
  Kenzo-Hugo Hillion authored 4 years ago
  
  27fbcb9a
- fix DeprecationWarnings · 557a134f
  Kenzo-Hugo Hillion authored 4 years ago
  
  557a134f
- use KEGGAPI instead of TOGOWS from dabeplech to retrieve KEGG details · bf4feb29
  Kenzo-Hugo Hillion authored 4 years ago
  
  bf4feb29
Aug 07, 2020
- Closes #34 set up computation of stats on celery worker · 9891cf32
  Kenzo-Hugo Hillion authored 4 years ago
  
  9891cf32
- Closes #144 replace bioapi by dabeplech · 5333a16a
  Kenzo-Hugo Hillion authored 4 years ago
  
  5333a16a
- add shebang to run_celery script · 6f4987d8
  Kenzo-Hugo Hillion authored 4 years ago
  
  add missing REDIS port to celery worker yaml conf
  6f4987d8
- change cronjob weekly and try new conf for celery · 9aa99a94
  Kenzo-Hugo Hillion authored 4 years ago
  
  9aa99a94
- update README and try to restore celery worker on kubernetes · bbde253f
  Kenzo-Hugo Hillion authored 4 years ago
  
  bbde253f
Jul 02, 2020
- finish command to generate light db · 2cc71fd9
  Kenzo-Hugo Hillion authored 5 years ago
  
  2cc71fd9
Jun 30, 2020
- start script to create light db · eb644605
  Kenzo-Hugo Hillion authored 5 years ago
  
  eb644605
Jun 29, 2020
- empty README and move to wiki pages · fce01755
  Kenzo-Hugo Hillion authored 5 years ago
  
  fce01755
Jun 22, 2020
- improve performances to get CSV from genes endpoint · 50cb8355
  Kenzo-Hugo Hillion authored 5 years ago
  
  50cb8355
- Add button on frontend to download csv from metadata list · 9551934d
  Kenzo-Hugo Hillion authored 5 years ago
  
  9551934d
- add methods and test to get csv from genes endpoint · 271d2a3b
  Kenzo-Hugo Hillion authored 5 years ago
  
  271d2a3b
- create csv qparam for genes and refactor cache for count · bd33850f
  Kenzo-Hugo Hillion authored 5 years ago
  
  bd33850f
Jun 18, 2020
- add allowed host for non debug backend · e03dbadd
  Kenzo-Hugo Hillion authored 5 years ago
  
  e03dbadd
- max number of fasta sequences in django env · ad8a488c
  Kenzo-Hugo Hillion authored 5 years ago
  
  ad8a488c
Jun 17, 2020
- refactor and add limit of 100000 fasta sequences · ebf8da30
  Kenzo-Hugo Hillion authored 5 years ago
  
  ebf8da30
- allow retrieving fasta file from gene list · 317bb154
  Kenzo-Hugo Hillion authored 5 years ago
  
  317bb154
Jun 11, 2020
- add eggnog card and improve gene details page · edb4828e
  Kenzo-Hugo Hillion authored 5 years ago
  
  edb4828e
Jun 04, 2020
- add migration and remove log print · 0e2273b7
  Kenzo-Hugo Hillion authored 5 years ago
  
  0e2273b7
- fix flake8 · 919c3d78
  Kenzo-Hugo Hillion authored 5 years ago
  
  919c3d78
- add statistics PUT and POST and fix Kegg Eggnog permissions · 3ed89f51
  Kenzo-Hugo Hillion authored 5 years ago
  
  3ed89f51
- perform clean of statistics only when specified · 6053af0b
  Kenzo-Hugo Hillion authored 5 years ago
  
  6053af0b
- allow to fix gene source when computing statistics · b54a6909
  Kenzo-Hugo Hillion authored 5 years ago
  
  b54a6909
Jun 03, 2020
- Use redis cache for paginator count · 74b3ce0d
  Kenzo-Hugo Hillion authored 5 years ago
  
  74b3ce0d
Jun 02, 2020
- Add filter on taxonomy id and use it on frontend · 31ddc457
  Kenzo-Hugo Hillion authored 5 years ago
  
  31ddc457
May 29, 2020
- Start adding filtering with a given taxonomy · c4505d65
  Kenzo-Hugo Hillion authored 5 years ago
  
  c4505d65
- add tool to compute all taxonomy entries present in at least one gene of the catalog · d6ad306e
  Kenzo-Hugo Hillion authored 5 years ago
  
  d6ad306e
May 14, 2020
- add taxonomy repartition for all gene sources · d96600fc
  Kenzo-Hugo Hillion authored 5 years ago
  
  d96600fc