Django-scripts.md

@@ -41,12 +41,16 @@ create_update_kegg_ko | Create or update all KEGG KO from KEGG API.
 
 ###### EggNOG
 
-* create_update_eggnog
-* create_eggnog_functional_cat
+Script | description
+------ | -----------
+create_update_eggnog | Create or update all EggNOG entries from annotations.tsv file
+create_eggnog_functional_cat | Create or update all EggNOG functional categories from COG_functional_categories.txt file.
 
 ###### Taxonomy
 
-* build_hierarchy
+Script | description
+------ | -----------
+build_hierarchy | Build hierarchy for taxonomy entries.
 
 ##### Import genes
 
@@ -54,17 +58,23 @@ create_update_kegg_ko | Create or update all KEGG KO from KEGG API.
 
 ###### IGC
 
-* import_igc_annotation
-* import_igc_sequences
+Script | description
+------ | -----------
+import_igc_annotation | Create or update IGC genes from IGC annotations file
+import_igc_sequences | Add IGC gene sequences to corresponding genes
 
 ###### Virgo
 
-* import_virgo_eggnog
-* import_virgo_genes
-* import_virgo_kegg
-* import_virgo_sequences
-* import_virgo_taxonomy
+Script | description
+------ | -----------
+import_virgo_genes | Create or update all Virgo genes (name and length from `0.geneLength.txt` file)
+import_virgo_eggnog | Create or update all EggNOG annotation for Virgo genes (from `3.eggnog.NOG.txt` file)
+import_virgo_kegg | Create or update all KEGG annotation for Virgo genes (from `8.A.kegg.ortholog.txt` file)
+import_virgo_sequences | Create or update all Virgo gene equences (from `NT.fasta` file)
+import_virgo_taxonomy | Create or update all Taxonomy annotations for Virgo genes (from `1.taxon.tbl.txt` file)
 
 #### Pre computed metrics
 
-* compute_stats
+Script | description
+------ | -----------
+compute_stats | Compute gene catalog statistics