Commit 43f4ae31 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

update README for tools

parent 7d24d76f
......@@ -18,4 +18,10 @@ All Snakemake tool descriptions try to respect some rules and best practices in
* There is usually a `options` to specify all other command line options
* the shell command
input and output are then set up in the Snakemake file that refer to the rule.
\ No newline at end of file
input and output are then set up in the Snakemake file that refer to the rule.
Therefore the rules cannot be used directly.
## Example
The directory for metaphlan2 rules give some example on the way to call the rules as well as setting
the parameters in the `config.yaml` file.
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment