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Metagenomics
snakemake
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43f4ae31
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43f4ae31
authored
May 13, 2019
by
Kenzo-Hugo Hillion
♻
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update README for tools
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@@ -18,4 +18,10 @@ All Snakemake tool descriptions try to respect some rules and best practices in
*
There is usually a
`options`
to specify all other command line options
*
the shell command
input and output are then set up in the Snakemake file that refer to the rule.
\ No newline at end of file
input and output are then set up in the Snakemake file that refer to the rule.
Therefore the rules cannot be used directly.
## Example
The directory for metaphlan2 rules give some example on the way to call the rules as well as setting
the parameters in the
`config.yaml`
file.
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