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Metagenomics
snakemake
Commits
b265ed7f
Commit
b265ed7f
authored
Nov 19, 2020
by
Kenzo-Hugo Hillion
♻
Browse files
mv output dir to params
parent
3bd54e46
Changes
1
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Side-by-side
tools/strainphlan/sample2markers/Snakefile
View file @
b265ed7f
...
...
@@ -8,11 +8,11 @@ rule sample2markers:
input:
__sample2markers_input
output:
dir = __sample2markers_output_dir,
file = __sample2markers_output
__sample2markers_output
params:
exec_command = __sample2markers_exec_command,
modules = __sample2markers_modules,
output_dir = __sample2markers_output_dir,
options = __sample2markers_options
threads:
__sample2markers_threads
...
...
@@ -20,5 +20,5 @@ rule sample2markers:
command = []
if params.modules:
command.append("module load {params.modules}")
command.append("{params.exec_command} -n {threads} {params.options} -i {input} -o {output
.
dir}")
command.append("{params.exec_command} -n {threads} {params.options} -i {input} -o {
params.
output
_
dir}")
shell(" && ".join(command))
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