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Commit 94c9225e authored by Nicolas  MAILLET's avatar Nicolas MAILLET
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Update Pypi presentation and add py3.9

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...@@ -19,7 +19,7 @@ Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-indu ...@@ -19,7 +19,7 @@ Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-indu
:target: http://rapid-peptide-generator.readthedocs.io/en/latest/?badge=latest :target: http://rapid-peptide-generator.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status :alt: Documentation Status
:note: RPG is tested with Gitlab Ci for the following Python version: 3.5, 3.6 and 3.7 :note: RPG is tested with Gitlab Ci for the following Python version: 3.5 to 3.9
:issues: Please use https://gitlab.pasteur.fr/nmaillet/rpg :issues: Please use https://gitlab.pasteur.fr/nmaillet/rpg
......
# -*- coding: utf-8 -*- """A setuptools based setup module.
import os See:
https://packaging.python.org/guides/distributing-packages-using-setuptools/
https://github.com/pypa/sampleproject
"""
# Always prefer setuptools over distutils
import pathlib
from setuptools import setup, find_packages from setuptools import setup, find_packages
_MAJOR = 1 here = pathlib.Path(__file__).parent.resolve()
_MINOR = 1
_MICRO = 0 # Get the long description from the README file
version = '%d.%d.%d' % (_MAJOR, _MINOR, _MICRO) long_description = (here / 'README.rst').read_text(encoding='utf-8')
release = '%d.%d' % (_MAJOR, _MINOR)
# Arguments marked as "Required" below must be included for upload to PyPI.
metainfo = { # Fields marked as "Optional" may be commented out.
'authors': {
'Maillet': ('Nicolas Maillet', 'nicolas.maillet@pasteur.fr'), setup(
}, # This is the name of your project. The first time you publish this
'version': version, # package, this name will be registered for you. It will determine how
'license': 'GPLv3', # users can install this project, e.g.:
'description': 'In silico protein digestion', #
'platforms': ['Linux', 'Unix', 'MacOsX', 'Windows'], # $ pip install sampleproject
"keywords": ["protein", "peptide", "enzyme", "protease", "digestion"], #
'classifiers': [ # And where it will live on PyPI: https://pypi.org/project/sampleproject/
#
# There are some restrictions on what makes a valid project name
# specification here:
# https://packaging.python.org/specifications/core-metadata/#name
name='rpg', # Required
# Versions should comply with PEP 440:
# https://www.python.org/dev/peps/pep-0440/
#
# For a discussion on single-sourcing the version across setup.py and the
# project code, see
# https://packaging.python.org/en/latest/single_source_version.html
version='1.1.0', # Required
# This is a one-line description or tagline of what your project does. This
# corresponds to the "Summary" metadata field:
# https://packaging.python.org/specifications/core-metadata/#summary
description='In silico protein digestion', # Optional
# This is an optional longer description of your project that represents
# the body of text which users will see when they visit PyPI.
#
# Often, this is the same as your README, so you can just read it in from
# that file directly (as we have already done above)
#
# This field corresponds to the "Description" metadata field:
# https://packaging.python.org/specifications/core-metadata/#description-optional
long_description=long_description, # Optional
# Denotes that our long_description is in Markdown; valid values are
# text/plain, text/x-rst, and text/markdown
#
# Optional if long_description is written in reStructuredText (rst) but
# required for plain-text or Markdown; if unspecified, "applications should
# attempt to render [the long_description] as text/x-rst; charset=UTF-8 and
# fall back to text/plain if it is not valid rst" (see link below)
#
# This field corresponds to the "Description-Content-Type" metadata field:
# https://packaging.python.org/specifications/core-metadata/#description-content-type-optional
#long_description_content_type='text/markdown', # Optional (see note above)
# This should be a valid link to your project's main homepage.
#
# This field corresponds to the "Home-Page" metadata field:
# https://packaging.python.org/specifications/core-metadata/#home-page-optional
url='https://gitlab.pasteur.fr/nmaillet/rpg', # Optional
# This should be your name or the name of the organization which owns the
# project.
author='Maillet Nicolas', # Optional
# This should be a valid email address corresponding to the author listed
# above.
author_email='nicolas.maillet@pasteur.fr', # Optional
# Classifiers help users find your project by categorizing it.
#
# For a list of valid classifiers, see https://pypi.org/classifiers/
classifiers=[ # Optional
# How mature is this project? Common values are
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
'Development Status :: 5 - Production/Stable', 'Development Status :: 5 - Production/Stable',
# Indicate who your project is intended for
'Intended Audience :: Science/Research', 'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering :: Bio-Informatics',
# Pick your license as you wish
'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)', 'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)',
'Operating System :: OS Independent',
# Specify the Python versions you support here. In particular, ensure
# that you indicate you support Python 3. These classifiers are *not*
# checked by 'pip install'. See instead 'python_requires' below.
'Programming Language :: Python :: 3.5', 'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6', 'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7', 'Programming Language :: Python :: 3.7',
'Topic :: Scientific/Engineering :: Bio-Informatics',] 'Programming Language :: Python :: 3.8',
} 'Programming Language :: Python :: 3.9',
],
# This field adds keywords for your project which will appear on the
# project page. What does your project relate to?
#
# Note that this is a list of additional keywords, separated
# by commas, to be used to assist searching for the distribution in a
# larger catalog.
keywords='protein, peptide, enzyme, protease, digestion', # Optional
with open('README.rst') as f: # When your source code is in a subdirectory under the project root, e.g.
readme = f.read() # `src/`, it is necessary to specify the `package_dir` argument.
#package_dir={'': 'rpg'}, # Optional
requirements = open("requirements.txt").read().split() # You can just specify package directories manually here if your project is
# simple. Or you can use find_packages().
#
# Alternatively, if you just want to distribute a single Python file, use
# the `py_modules` argument instead as follows, which will expect a file
# called `my_module.py` to exist:
#
# py_modules=["my_module"],
#
packages=find_packages(), # Required
on_rtd = os.environ.get('READTHEDOCS', None) == 'True' # Specify which Python versions you support. In contrast to the
if on_rtd: # 'Programming Language' classifiers above, 'pip install' will check this
# mock, pillow, sphinx, sphinx_rtd_theme installed on RTD # and refuse to install the project if the version does not match. See
# but we also need numpydoc and sphinx_gallery # https://packaging.python.org/guides/distributing-packages-using-setuptools/#python-requires
extra_packages = ["numpydoc", "sphinx_gallery"] python_requires='>=3.5',
requirements += extra_packages
# This field lists other packages that your project depends on to run.
# Any package you put here will be installed by pip when your project is
# installed, so they must be valid existing projects.
#
# For an analysis of "install_requires" vs pip's requirements files see:
# https://packaging.python.org/en/latest/requirements.html
install_requires=[''], # Optional
setup( # List additional groups of dependencies here (e.g. development
name='rpg', # dependencies). Users will be able to install these using the "extras"
version=version, # syntax, for example:
maintainer=metainfo['authors']['Maillet'][0], #
maintainer_email=metainfo['authors']['Maillet'][1], # $ pip install sampleproject[dev]
author='Nicolas Maillet', #
author_email=metainfo['authors']['Maillet'][1], # Similar to `install_requires` above, these must be valid existing
long_description=readme, # projects.
keywords=metainfo['keywords'], extras_require={ # Optional
description=metainfo['description'], 'test': ['pytest', 'pytest-cov'],
license=metainfo['license'], },
platforms=metainfo['platforms'],
classifiers=metainfo['classifiers'], # If there are data files included in your packages that need to be
zip_safe=False, # installed, specify them here.
packages=find_packages(), #package_data={ # Optional
install_requires=requirements, # 'sample': ['package_data.dat'],
#},
# This is recursive include of data files
exclude_package_data={"": ["__pycache__"]}, # Although 'package_data' is the preferred approach, in some case you may
# Command line # need to place data files outside of your packages. See:
entry_points={ # http://docs.python.org/distutils/setupscript.html#installing-additional-files
#
# In this case, 'data_file' will be installed into '<sys.prefix>/my_data'
#data_files=[('my_data', ['data/data_file'])], # Optional
# To provide executable scripts, use entry points in preference to the
# "scripts" keyword. Entry points provide cross-platform support and allow
# `pip` to create the appropriate form of executable for the target
# platform.
#
# For example, the following would provide a command called `sample` which
# executes the function `main` from this package when invoked:
entry_points={ # Optional
'console_scripts': [ 'console_scripts': [
'rpg=rpg.RapidPeptidesGenerator:main' 'rpg=rpg.RapidPeptidesGenerator:main',
] ],
} },
)
# List additional URLs that are relevant to your project as a dict.
#
# This field corresponds to the "Project-URL" metadata fields:
# https://packaging.python.org/specifications/core-metadata/#project-url-multiple-use
#
# Examples listed include a pattern for specifying where the package tracks
# issues, where the source is hosted, where to say thanks to the package
# maintainers, and where to support the project financially. The key is
# what's used to render the link text on PyPI.
project_urls={ # Optional
'Doc': 'https://rapid-peptide-generator.readthedocs.io/en/latest/',
# 'Funding': 'https://donate.pypi.org',
# 'Say Thanks!': 'http://saythanks.io/to/example',
# 'Source': 'https://github.com/pypa/sampleproject/',
},
)
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