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Nicolas MAILLET
rpg
Commits
e4519749
Commit
e4519749
authored
Nov 05, 2018
by
Nicolas MAILLET
Browse files
Add IPC pKa values
parent
1de427f7
Changes
1
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Inline
Side-by-side
rpg/core.py
View file @
e4519749
...
...
@@ -63,15 +63,26 @@ AA_MASS_AVERAGE = {"*" : 0.0,
WATER_MASS
=
18.01528
"""Mass of a water molecule."""
AA_PKA
=
{
"Nterm"
:
8.0
,
"C"
:
8.3
,
"D"
:
4.1
,
"E"
:
4.1
,
"H"
:
6.0
,
"K"
:
10.8
,
"R"
:
12.5
,
"Y"
:
10.9
,
"Cterm"
:
3.1
}
# Biochemistry Stryer 7th
#AA_PKA = {"Nterm" : 8.0,
# "C" : 8.3,
# "D" : 4.1,
# "E" : 4.1,
# "H" : 6.0,
# "K" : 10.8,
# "R" : 12.5,
# "Y" : 10.9,
# "Cterm" : 3.1}
# IPC_peptide
AA_PKA
=
{
"Nterm"
:
9.564
,
"C"
:
8.297
,
"D"
:
3.887
,
"E"
:
4.317
,
"H"
:
6.018
,
"K"
:
10.517
,
"R"
:
12.503
,
"Y"
:
10.071
,
"Cterm"
:
2.383
}
"""pKa of important amino acid to compute pI."""
def
handle_errors
(
message
=
""
,
err
=
1
,
error_type
=
""
):
...
...
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