Docker image builds 20221005 backend per default

recipes/Dockerfile

-FROM julia:1.7.3-bullseye
+FROM julia:1.8.2-bullseye
 
 ENV DIRNAME app
 ARG BRANCH=main
-RUN apt-get update && apt-get install -y \
-    git \
+ARG TIMEZONE=UTC
+RUN apt-get update \
+ && apt-get install -y git \
  && rm -rf /var/lib/apt/lists/* \
  && git clone --depth 1 --single-branch -b $BRANCH https://gitlab.pasteur.fr/nyx/larvatagger.jl $DIRNAME \
  && julia --project=$DIRNAME -e 'using Pkg; Pkg.instantiate()' \
- && ln -s /$DIRNAME/scripts/larvatagger.jl /bin
-
-# COPY requires at least one file defined, hence `test/precompile.sh`
-COPY test/precompile.sh test/data_sample* $DIRNAME/test/
-
-ARG TIMEZONE=UTC
-RUN ln -snf /usr/share/zoneinfo/$TIMEZONE /etc/localtime \
- && echo $TIMEZONE > /etc/timezone \
- && $DIRNAME/test/precompile.sh --shallow \
- && mv larvatagger.so /lib/ \
- && rm -f $DIRNAME/test/data_sample*
+ && ln -s /$DIRNAME/scripts/larvatagger.jl /bin \
+ && ln -snf /usr/share/zoneinfo/$TIMEZONE /etc/localtime \
+ && echo $TIMEZONE > /etc/timezone
 
 COPY external $DIRNAME/
 
 ARG BACKEND
-RUN if [ "$BACKEND" = "MaggotUBA/20220418" ]; then \
-    apt-get update && apt-get install -y \
-    python3-pip \
+RUN cd $DIRNAME; \
+    if [ "$BACKEND" = "MaggotUBA/20220418" ]; then \
+    apt-get update \
+ && apt-get install -y python3-pip \
  && python3 -m pip install poetry \
- && cd $DIRNAME \
  && git clone --depth 1 --single-branch -b 20220418 https://gitlab.pasteur.fr/nyx/MaggotUBA-adapter MaggotUBA \
  && cd MaggotUBA \
  && python3 -m poetry remove structured-temporal-convolution \
  && python3 -m poetry add ../structured-temporal-convolution \
  && python3 -m poetry install \
+ && cd .. \
+ && apt-get clean \
+ && rm -rf /var/lib/apt/lists/*; \
+    elif [ "$BACKEND" = "MaggotUBA/20221005" ]; then \
+    apt-get update \
+ && apt-get install -y python3-pip \
+ && python3 -m pip install poetry \
+ && git clone --depth 1 --single-branch -b 20221005 https://gitlab.pasteur.fr/nyx/MaggotUBA-adapter MaggotUBA \
+ && cd MaggotUBA \
+ && python3 -m poetry remove structured-temporal-convolution \
+ && python3 -m poetry add ../structured-temporal-convolution \
+ && python3 -m poetry install \
+ && python3 -m poetry run python -c 'import julia; julia.install()' \
+ && python3 -m poetry run python -c 'from julia.api import Julia; Julia(compiled_modules=False); from julia import Pkg; Pkg.add(url="https://gitlab.pasteur.fr/nyx/planarlarvae.jl", rev="dev"); Pkg.add(url="https://gitlab.pasteur.fr/nyx/TaggingBackends", rev="dev")' \
+ && cd .. \
  && apt-get clean \
  && rm -rf /var/lib/apt/lists/*; \
-    fi
+    fi; \
+    cd ..
 
-ENTRYPOINT ["larvatagger.jl", "--sysimage", "/lib/larvatagger.so"]
+ENTRYPOINT ["larvatagger.jl"]

recipes/Dockerfile.local

-FROM julia:1.7.3-bullseye
+FROM julia:1.8.2-bullseye
 
 COPY src /app/src/
 COPY scripts /app/scripts/
 COPY Project.toml Manifest.toml /app/
 
-RUN apt-get update && apt-get install -y \
-    git \
+RUN apt-get update \
+ && apt-get install -y git \
  && rm -rf /var/lib/apt/lists/* \
  && cd /app \
  && julia --project=. -e 'using Pkg; Pkg.instantiate()' \
-    ln -s /app/scripts/larvatagger.jl /bin
+ && ln -s /app/scripts/larvatagger.jl /bin
 
 ENTRYPOINT ["larvatagger.jl"]

scripts/larvatagger.sh

@@ -17,7 +17,7 @@ while ! [ -z "$1" ]; do
 if [ "$1" == "--dev" -o "$1" == "--stable" ]; then
 BUILD=$1; shift
 elif [ "$1" == "--get-backend" ]; then
-DOCKER_ARGS="--build-arg BACKEND=MaggotUBA/20220418 "; shift
+DOCKER_ARGS="--build-arg BACKEND=MaggotUBA/20221005 "; shift
 cd ./external
 if [ -d structured-temporal-convolution ]; then
 cd structured-temporal-convolution; git pull; cd ..