Merge branch 'dev' into 'main'

Bugfixes for #15, #16 and #17

Closes #17, #16, and #15

See merge request !1

Project.toml

 name = "PlanarLarvae"
 uuid = "c2615984-ef14-4d40-b148-916c85b43307"
 authors = ["François Laurent", "Institut Pasteur"]
-version = "0.11.1"
+version = "0.11.2"
 
 [deps]
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
@@ -20,6 +20,7 @@ StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
 
 [compat]
 julia = "1.6"
+Meshes = "< 0.30.0"
 
 [extras]
 LazyArtifacts = "4af54fe1-eca0-43a8-85a7-787d91b784e3"

src/Datasets.jl

@@ -1254,7 +1254,7 @@ function getdependencies(run::Run, filepath=nothing)
     deps = String[]
     for dep in object_or_array_of_objects(run.attributes[:dependencies])
         datafile = dep[:filename]
-        if !isfile(datafile)
+        if !isnothing(filepath)
             dirpath = isdir(filepath) ? filepath : dirname(filepath)
             datafile = joinpath(dirpath, datafile)
         end

src/Formats.jl

@@ -689,13 +689,13 @@ The returned array of files can be muted.
 """
 find_associated_files(file::String) = find_associated_files(preload(file))
 
-function find_associated_files(files::Vector{String})
-    unique(find_associated_files.(files)) do f
+function find_associated_files(files::AbstractVector)
+    unique(Iterators.flatmap(find_associated_files, files)) do f
         f.source
     end
 end
 
-find_associated_files(file) = PreloadedFile[file]
+find_associated_files(file::PreloadedFile) = PreloadedFile[file]
 
 function find_associated_files(file::JSONLabels)
     getdependencies!(file)