Writing submaps optional?

this line

echo ${profile_cmd} ${gmconvert} -imap ${map_name}  -gmml 'tmp_$((SLURM_ARRAY_TASK_ID+offset)).txt' -oimap $n/'sub_$((SLURM_ARRAY_TASK_ID+offset-1)).mrc' -ogmm $n/${n}_'$((SLURM_ARRAY_TASK_ID-1+offset))'.gmm -ng ${n_gaussians} -zth ${threshold}

should be

	echo ${profile_cmd} ${gmconvert} -imap ${map_name}  -gmml 'tmp_$((SLURM_ARRAY_TASK_ID+offset)).txt'  -ogmm $n/${n}_'$((SLURM_ARRAY_TASK_ID-1+offset))'.gmm -ng ${n_gaussians} -zth ${threshold}

unless submaps are needed for something else...

that will save a lot of disk space (and time)

Without that flag the job runs anyway

The submaps are used to compute the local CC. They are removed once the local CC has been computed.

closed

They take a lot of space, would it be possible to compute the local CC using only the original map?

since df07057e we don't store intermediate submaps as it uses too much space when many are computed at a time

well submaps also use a lot of space: 640 submaps occupy 17G in my case

yes this is why now everything is done in memory, intermediate sub maps aren't saved anymore.

mentioned in issue #72