Writing submaps optional?

this line

echo ${profile_cmd} ${gmconvert} -imap ${map_name}  -gmml 'tmp_$((SLURM_ARRAY_TASK_ID+offset)).txt' -oimap $n/'sub_$((SLURM_ARRAY_TASK_ID+offset-1)).mrc' -ogmm $n/${n}_'$((SLURM_ARRAY_TASK_ID-1+offset))'.gmm -ng ${n_gaussians} -zth ${threshold}

should be

	echo ${profile_cmd} ${gmconvert} -imap ${map_name}  -gmml 'tmp_$((SLURM_ARRAY_TASK_ID+offset)).txt'  -ogmm $n/${n}_'$((SLURM_ARRAY_TASK_ID-1+offset))'.gmm -ng ${n_gaussians} -zth ${threshold}

unless submaps are needed for something else...

that will save a lot of disk space (and time)