print colored positions to check consistency of residue mapping

test.py

@@ -27,7 +27,23 @@ for csv in ["Resultat.b.csv"]:
     #cldb_tmp.rename_proteins({"TssKHis6":"TssK","StrepTssF":"TssF","TssGFlag":"TssG","HATssE":"TssE"})
     cldb_tmp.set_name(csv)
     cldb.append_database(cldb_tmp)
-    
-cldb.align_sequence('pairwise_alignment_NeisseriaTo_3ja1n_0.08.txt')
+
+cldb.align_sequence('tools/pairwise_alignment_NeisseriaTo_3ja1n_0.08.txt')
+
+renamedict={}
+for xl in cldb:
+     try:
+         protname=xl[cldb.protein1_key].split("|")[2]
+         renamedict[xl[cldb.protein1_key]]=protname
+     except:
+         pass
+     try:
+         protname=xl[cldb.protein2_key].split("|")[2]
+         renamedict[xl[cldb.protein2_key]]=protname
+     except:
+         pass
+
+cldb.rename_proteins(renamedict)
+
 
 #print(cldb)