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Commit ce52f22c authored by Vincent LAVILLE's avatar Vincent LAVILLE
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Update correlationMatrix.R

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R/correlationMatrix.R
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...@@ -138,7 +138,7 @@ getGenoCorMatrix <- function(lrsid, lchr, lpos, lrefall, pop, path = NULL, web = ...@@ -138,7 +138,7 @@ getGenoCorMatrix <- function(lrsid, lchr, lpos, lrefall, pop, path = NULL, web =
lind <- lind[lind$Paternal.ID == 0 & lind$Maternal.ID == 0, 2] lind <- lind[lind$Paternal.ID == 0 & lind$Maternal.ID == 0, 2]
testMat <- getAdditivelyCodedMatrix(genoMat,lind) testMat <- getAdditivelyCodedMatrix(genoMat,lind)
testMat <- testMat[-which(apply(testMat, 1, sd) == 0, ] testMat <- testMat[-which(apply(testMat, 1, sd) == 0), ]
to_remove <- NULL to_remove <- NULL
for (i in 1:nrow(testMat)) { for (i in 1:nrow(testMat)) {
if (!(rownames(testMat)[i] %in% lrsid)) { if (!(rownames(testMat)[i] %in% lrsid)) {
......
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