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Commit 17b2c707 authored by Hanna  JULIENNE's avatar Hanna JULIENNE
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Revert "extend allele length"

This reverts commit 407bd265
parent 407bd265
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2 merge requests!18Revert "extend allele length",!17extend allele length
...@@ -329,9 +329,9 @@ def create_worktable_file( ...@@ -329,9 +329,9 @@ def create_worktable_file(
) # Covariance matrix ) # Covariance matrix
regions = read_hdf(init_file_path, "Regions").index.tolist() regions = read_hdf(init_file_path, "Regions").index.tolist()
sum_stat_tab_min_itemsizes = {"snp_ids": 80, "Region": 10, "CHR": 5} sum_stat_tab_min_itemsizes = {"snp_ids": 50, "Region": 10, "CHR": 5}
region_sub_table_min_itemsizes = { region_sub_table_min_itemsizes = {
"Region": 10, "index": 10, "CHR": 5, "snp_ids": 50, "signif_status": 20, ,"Ref_allele" : 70, "Alt_allele":70} "Region": 10, "index": 10, "CHR": 5, "snp_ids": 50, "signif_status": 20}
smart_na_computation = not (remove_nan) smart_na_computation = not (remove_nan)
module_name, function_name = stat.split(":") module_name, function_name = stat.split(":")
...@@ -838,3 +838,4 @@ def create_genome_full_csv(project_hdf_path, csv_file, chunk_size=50, Nchunk=35) ...@@ -838,3 +838,4 @@ def create_genome_full_csv(project_hdf_path, csv_file, chunk_size=50, Nchunk=35)
The_file_is_available = False The_file_is_available = False
return The_file_is_available return The_file_is_available
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