test to fix gencov

jass/models/worktable.py

@@ -865,11 +865,18 @@ def get_worktable_gencov(project_hdf_path: str):
 
     for i in range(gencov.shape[0]):
         for j in range(i, gencov.shape[0]):
-            lines.append({
-                "phenotypeID_A": sorted_trait.iloc[i],
-                "phenotypeID_B": sorted_trait.iloc[j],
-                "gencov":gencov.loc[sorted_trait.index[i], sorted_trait.index[j]]
-                })
+            if np.isnan(gencov.loc[sorted_trait.index[i], sorted_trait.index[j]]):
+                lines.append({
+                    "phenotypeID_A": sorted_trait.iloc[i],
+                    "phenotypeID_B": sorted_trait.iloc[j],
+                    "gencov":"null"
+                    })
+            else:
+                lines.append({
+                    "phenotypeID_A": sorted_trait.iloc[i],
+                    "phenotypeID_B": sorted_trait.iloc[j],
+                    "gencov":gencov.loc[sorted_trait.index[i], sorted_trait.index[j]]
+                    })
 
     print(lines)
     return lines
@@ -1062,4 +1069,4 @@ def create_genome_full_csv_lock_file(project_hdf_path):
     the_lock = "The lock is set on : workTable.csv is not yet available"
     file_lock = open(the_lock_path, "w")
     file_lock.write(the_lock)
-    file_lock.close()
\ No newline at end of file
+    file_lock.close()