Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Statistical-Genetics
jass
Commits
c56e7f0b
Commit
c56e7f0b
authored
May 18, 2022
by
Hanna JULIENNE
Browse files
test to fix gencov
parent
48243ca3
Changes
1
Hide whitespace changes
Inline
Side-by-side
jass/models/worktable.py
View file @
c56e7f0b
...
...
@@ -865,11 +865,18 @@ def get_worktable_gencov(project_hdf_path: str):
for
i
in
range
(
gencov
.
shape
[
0
]):
for
j
in
range
(
i
,
gencov
.
shape
[
0
]):
lines
.
append
({
"phenotypeID_A"
:
sorted_trait
.
iloc
[
i
],
"phenotypeID_B"
:
sorted_trait
.
iloc
[
j
],
"gencov"
:
gencov
.
loc
[
sorted_trait
.
index
[
i
],
sorted_trait
.
index
[
j
]]
})
if
np
.
isnan
(
gencov
.
loc
[
sorted_trait
.
index
[
i
],
sorted_trait
.
index
[
j
]]):
lines
.
append
({
"phenotypeID_A"
:
sorted_trait
.
iloc
[
i
],
"phenotypeID_B"
:
sorted_trait
.
iloc
[
j
],
"gencov"
:
"null"
})
else
:
lines
.
append
({
"phenotypeID_A"
:
sorted_trait
.
iloc
[
i
],
"phenotypeID_B"
:
sorted_trait
.
iloc
[
j
],
"gencov"
:
gencov
.
loc
[
sorted_trait
.
index
[
i
],
sorted_trait
.
index
[
j
]]
})
print
(
lines
)
return
lines
...
...
@@ -1062,4 +1069,4 @@ def create_genome_full_csv_lock_file(project_hdf_path):
the_lock
=
"The lock is set on : workTable.csv is not yet available"
file_lock
=
open
(
the_lock_path
,
"w"
)
file_lock
.
write
(
the_lock
)
file_lock
.
close
()
\ No newline at end of file
file_lock
.
close
()
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment