test docker deployment

.gitlab-ci.yml

@@ -22,6 +22,21 @@ test-python:
       ]
 
 
+test-docker-compose:
+  image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
+  services:
+    - registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
+  needs: []
+  stage: test
+  script:
+  - apt-get update && apt install -y jq
+  - ./test_docker_compose.sh
+  artifacts:
+    paths:
+    - log
+    expire_in: 1 week
+
+
 #test-backend-image:
 #  image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
 #  services:

docker-compose.test.yaml

+version: '3.4'
+services:
+  celery:
+    volumes:
+      - ./jass/test/data_test1:/data
+  back:
+    volumes:
+      - ./jass/test/data_test1:/data
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test_docker_compose.sh

+#!/usr/bin/env bash
+
+docker-compose -f docker-compose.yaml -f docker-compose.test.yaml up -d --build
+
+curl -I http://0.0.0.0:3000/ \
+  1> log/01-index.log \
+  2> log/01-index.err
+
+if [ "$(cat log/01-index.log | grep "200 OK" | wc -l)" == "0" ]; then exit 01; fi
+
+curl -I http://0.0.0.0:3000/phenotypes \
+  1> log/02-phenotypes.log \
+  2> log/02-phenotypes.err
+
+if [ "$(cat log/02-*.log | grep "200 OK" | wc -l)" == "0" ]; then exit 02; fi
+
+curl --location --request POST 'http://0.0.0.0:8080/api/projects' \
+--header 'Accept: text/html' \
+--header 'Content-Type: application/json' \
+--data-raw '{"phenotypeID": ["z_DISNEY_POCAHONT", "z_DISNEY_RATATOUY"]}' \
+  -o log/03-post-phenotypes.json \
+  1> log/03-post-phenotypes.log \
+  2> log/03-post-phenotypes.err
+
+PROJECT_ID=$(jq .id log/03-post-phenotypes.json | sed 's/\"//g')
+if [ ! -d "projects/project_$PROJECT_ID" ]; then
+  exit 03
+fi
+
+curl -I http://0.0.0.0:3000/projects/$PROJECT_ID \
+  1> log/04-project.log \
+  2> log/04-project.err
+
+if [ "$(cat log/04-*.log | grep "200 OK" | wc -l)" == "0" ]; then exit 04; fi
+
+curl http://0.0.0.0:8080/api/projects/$PROJECT_ID/globalmanhattan \
+  -o log/05-globalmanhattan.png \
+  1> log/05-globalmanhattan.log \
+  2> log/05-globalmanhattan.err
+
+if [ ! -s log/05-*.png ]; then exit 05; fi
+
+curl http://0.0.0.0:8080/api/projects/$PROJECT_ID/quadrant \
+  -o log/06-quadrant.png \
+  1> log/06-quadrant.log \
+  2> log/06-quadrant.err
+
+if [ ! -s log/06-*.png ]; then exit 06; fi
+
+curl http://0.0.0.0:8080/api/projects/$PROJECT_ID/genome_full \
+  -o log/07-genome_full.csv \
+  1> log/07-genome_full.log \
+  2> log/07-genome_full.err
+
+if [ ! -s log/07-*.csv ]; then exit 07; fi
+
+exit 0
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