answer issues 55 to 60 and 62 and 63
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#55 Progress window that display the % achieved during computation
#60 add .csv to the file genome_full
#59 #58 reduce number of digits in tables
fix #57 put values into PVALmin
fix #63 JASS_PVAL shows -log10(PVALUE)
#62 add references to jass papers
Edited by Bryan BRANCOTTE
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8 @author: clasry 5 @author: vguillem, hmenager, hjulienn, clasry 9 6 """ 10 7 8 import matplotlib.patches as mpatches 9 from matplotlib import colors 10 import matplotlib.pyplot as plt 11 import logging 12 import os 11 13 from pandas import DataFrame, read_hdf 12 # create (or open) an hdf5 file and opens in append mode 14 13 15 import numpy as np 14 16 import matplotlib 15 17 16 18 matplotlib.use("AGG") -
@cnerin be careful here, you reorganized the matplotlib imports, but the previous order had a specific purpose: in order to enable running jass on machines with no X servers, we needed to configure it to use the AGG graphics backend. The way to achieve that was by (1) importing matplotlib, (2) configuring it to use AGG, (3) importing matplotlib submodules we want to use.
mentioned in commit 10cc3a27