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answer issues 55 to 60 and 62 and 63

Merged Cyril NERIN requested to merge dev_cne into dev

#55 Progress window that display the % achieved during computation

#60 add .csv to the file genome_full

#59 #58 reduce number of digits in tables

fix #57 put values into PVALmin

fix #63 JASS_PVAL shows -log10(PVALUE)

#62 add references to jass papers

Edited by Bryan BRANCOTTE