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Statistical-Genetics
jass
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!76
Maintenance numpy + add extract csv command lines
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Maintenance numpy + add extract csv command lines
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Hanna JULIENNE
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@@ -38,8 +38,14 @@ If the user wishes to, she/he can specify a vector of weight by using the --cust
Access HDFStore components
--------------------------
To access e
ach table of the HDFStore
you can use `pandas read_hdf functions <https://pandas.pydata.org/docs/reference/api/pandas.read_hdf.html>`_ :
E
ach table of the HDFStore
is accessible through the command line tool `jass extract-tsv` (see command line reference for complete details).
.. code-block:: shell
jass extract-tsv --hdf5-table-path ./initTable.hdf5 --tsv-path './test_extract.tsv' --table-key SumStatTab
Alternately, you can use directly `pandas read_hdf functions <https://pandas.pydata.org/docs/reference/api/pandas.read_hdf.html>`_ :
For instance if you want to access the Regions table :
.. code-block:: python
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